View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_low_19 (Length: 363)
Name: NF11585_low_19
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_19 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 25600728 - 25600384
Alignment:
| Q |
1 |
agggcatttgagaagtttaaacttcaaggctatgaaacacagatatagacacgaaaccaatcacaacattgacactgacagggacacgtagaaaacagta |
100 |
Q |
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| T |
25600728 |
agggcatttgagaagtttaaacttcaaggctatgaaacacagatatagacacgaaaccaatcacaacattgacactgacagggacacgtagaaaacagta |
25600629 |
T |
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| Q |
101 |
atgatttgagaaaatagaagtaatccaattgatatgacacttacatgtgtcaaatagtgaacacgcattcaaacgtattgtccttgttacttaacttcaa |
200 |
Q |
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| T |
25600628 |
atgatttgagaaaatagaagtaatccaattgatatgacacttacatgtgtcaaatagtgaacacacattcaatcgtattgtccttgttacttaacttcaa |
25600529 |
T |
|
| Q |
201 |
tgtcgttcttattattattattggaagaactcaatgataagagaaaagtaaattcaaaattatattgataatgagataatataaattacatcaaggagta |
300 |
Q |
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| T |
25600528 |
tgtcgttcttattattattattggaagaagtcaatgataagagaaaagtaaattcaaaattatattgataatgagataatataaattacatcaaggagta |
25600429 |
T |
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| Q |
301 |
cataaggtaactgttatatctaataactgtcaccagctgtttact |
345 |
Q |
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| T |
25600428 |
cataaggtaactgttatatataataactgtcaccagctgtttact |
25600384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 25590872 - 25590839
Alignment:
| Q |
275 |
gataatataaattacatcaaggagtacataaggt |
308 |
Q |
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| T |
25590872 |
gataatataaactacatcaaggagtacataaggt |
25590839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 10266 - 10218
Alignment:
| Q |
259 |
attatattgataatgagataatataaattacatcaaggagtacataagg |
307 |
Q |
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| T |
10266 |
attatattaattatgagataatataaattacatgaaggcatacataagg |
10218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 26499159 - 26499095
Alignment:
| Q |
236 |
gataagagaaaagtaaattcaaaattatattgataatgagataatataaattacatcaaggagtacat |
303 |
Q |
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| T |
26499159 |
gataagagaaaagtaaa-tgaaaattatattgattatgaaata--atgaattacatcaaggggtacat |
26499095 |
T |
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