View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_low_26 (Length: 295)
Name: NF11585_low_26
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 48833991 - 48833706
Alignment:
| Q |
1 |
taggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatggcacaaa |
100 |
Q |
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| T |
48833991 |
taggtatcaaagacaccgttgacaaaccaaattcaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatggcacaaa |
48833892 |
T |
|
| Q |
101 |
aagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctcgtacatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48833891 |
aagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgatgccaatgatattataacaccagctcgtacatca |
48833792 |
T |
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| Q |
201 |
aatcctatgtgaaacttccaattggcccagctagatccatagataaatatataatatatgttagtctctctaaaatatgatgtcca |
286 |
Q |
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| T |
48833791 |
aatcctatgtgaaacttccaattggcccagctagatccataaataaatatataatatatgttagtctctctaaaatatgatgtcca |
48833706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 48790208 - 48790434
Alignment:
| Q |
3 |
ggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatggcacaaaaa |
102 |
Q |
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| T |
48790208 |
ggtatcaaagacacagtcgatagaccaaatccaaactcaccagaatcgaaaaatgtcttaaagtaaaattcttctgttggatcttggtatggcacaaaca |
48790307 |
T |
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| Q |
103 |
gttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctcgtacatcaaa |
202 |
Q |
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| T |
48790308 |
actcagaaatgtaccctttgtataatactctacgatatatgtgcttctctagatcataaatagatgcaagggatattacaataccagctcgtacatcaaa |
48790407 |
T |
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| Q |
203 |
tcctatgtgaaacttccaattggccca |
229 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
48790408 |
tcctatatgaaacttccaattggccca |
48790434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15825737 - 15825965
Alignment:
| Q |
1 |
taggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatggcacaaa |
100 |
Q |
| |
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||||||||||||| || || || |||||||||| ||||||||||||| || || |||||||||||||| || || | ||||||||||||||||||||| |
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| T |
15825737 |
taggtatcaaagaaacagtagatcgaccaaatccatactctccagcatcgaaaaatgtcttaaagtaaaactcttctgttggatcttggtatggcacaaa |
15825836 |
T |
|
| Q |
101 |
aagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctcgtacatca |
200 |
Q |
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| T |
15825837 |
caactcagaaatataccctttgtataatactctacgagatttgtgtttttcaaggtcgtaaatagatgcaagtgatattataataccagctcgtacatca |
15825936 |
T |
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| Q |
201 |
aatcctatgtgaaacttccaattggccca |
229 |
Q |
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|||||||| ||||||||||| |||||||| |
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| T |
15825937 |
aatcctatatgaaacttccagttggccca |
15825965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 48816507 - 48816738
Alignment:
| Q |
1 |
taggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatggcacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| || || | ||| ||||| || |||||||| |
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| T |
48816507 |
taggtatcaaagacaccgttgacagaccaaatccaaactctccagaatcaaagaaagtcttaaagtaaaactcttcggttgggtcttgataaggcacaaa |
48816606 |
T |
|
| Q |
101 |
aagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgtaggttgaagccaatgatattataacaccagctcgtacatca |
200 |
Q |
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|| || |||||||| |||||||| | ||| | ||||| || || |||||||||||||| | || || | |||||| | | |||||||||||||||| |
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| T |
48816607 |
tagctcggaaatgtagcctttgtagagtacacggcgagacttatgtttctctagatcgtaaatagatgcaagtgatatcactataccagctcgtacatca |
48816706 |
T |
|
| Q |
201 |
aatcctatgtgaaacttccaattggcccagct |
232 |
Q |
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|||||||| ||||||||||| ||||||||||| |
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| T |
48816707 |
aatcctatatgaaacttccagttggcccagct |
48816738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 48807948 - 48808106
Alignment:
| Q |
1 |
taggtatcaaagacaccgttgacaaaccaaatccaaactctccagcatcaaagaaagtcttaaagtaaaattcatcagatggatcttggtatggcacaaa |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || | ||| ||||| || |||||||| |
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| T |
48807948 |
taggtatcaaagacaccgttgacagggcaaatccaaactctccagaatcaaagaaagtcttaaagtaaaattcttcggttgggtcttgataaggcacaaa |
48808047 |
T |
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| Q |
101 |
aagttcagaaatgtatcctttgtataatactctacgagatttgtgcttctctagatcgta |
160 |
Q |
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|| || |||||||| ||||||| | ||| | |||| | ||||| ||||||| |||||| |
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| T |
48808048 |
tagctcggaaatgta-gctttgtagagtacacgacgaaacttgtgtttctctatatcgta |
48808106 |
T |
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