View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_low_28 (Length: 277)
Name: NF11585_low_28
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 54291405 - 54291145
Alignment:
| Q |
1 |
taaggaaaaacttctcgttgcaaaactcgttctactatatctgtcaaggaactttgaaaacttatgtatacattattacttttgtttgaggagggtgnnn |
100 |
Q |
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||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54291405 |
taaggaaaaacttctagttg--aaactcgtcctactatatctgtcaaggaactttgaaaacttatgtatacattattacttttgtttgaggagggtgttt |
54291308 |
T |
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| Q |
101 |
nnnnaatctcggattatttatatcaaaattgaaatgaagttgcatcactaatctcaaaatacacatttaaaaacaaattttaagtcattagaaggtagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54291307 |
ttttaatctcggattatttatatcaaaattgaaatgaagttgcatcactaatctcaaaatacacatttaaaaacaaattttaagtcattagaaagtagtt |
54291208 |
T |
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| Q |
201 |
ttagagcaatcgatgtaaaactgcagcatgccaatgtccgatgccacactatcacttgctttt |
263 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54291207 |
ttagagcaatcgatgtaaaactgcagcatgtcaatgtccgatgccacactatcacttgctttt |
54291145 |
T |
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