View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11585_low_31 (Length: 255)
Name: NF11585_low_31
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 2923121 - 2922875
Alignment:
| Q |
1 |
ctttaagaaggccgacaaaggcaattcaggaacacttacggtcaaagaatttcaagaggtcatggatgacatctgtgtacgatatcctcaggttgagctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2923121 |
ctttaagaaggccgacaaaggcaattcaggaacacttacggtcaaagaatttcaagaggtcatggatgacatctgtgtacgatatcctcaggttgagctg |
2923022 |
T |
|
| Q |
101 |
tatctgaaaaataaacagatgcacaacattgctgatttattgaaggaagccaagggagatgttgaaaaagaatcaattaaactgaatatcgaagaactca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2923021 |
tatctgaaaaataaacagatgcacaacattgctgatttattgaaggaagccaagggagatgttgaaaaagaatcaattaaactgaatatcgaagaactca |
2922922 |
T |
|
| Q |
201 |
aaacagcactttccaaagtggattctcagatgaaatttctctctgct |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2922921 |
aaacagcactttccaaagtggattctcagatgaaatttctccctgct |
2922875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 36127969 - 36128190
Alignment:
| Q |
26 |
tcaggaacacttacggtcaaagaatttcaagaggtcatggatgacatctgtgtacgatatcctcaggttgagctgtatctgaaaaataaacagatgcaca |
125 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||| |||||||||||| | | || |||||||| ||||| ||||| || |||||||||||||| |
|
|
| T |
36127969 |
tcaggaacacttacactcaaagaatttcaggaggtaatgaatgacatctgtgaaaggtaccctcaggtggagctatatctaaagaataaacagatgcatg |
36128068 |
T |
|
| Q |
126 |
acattgctgatttattgaaggaagccaagggagatgttgaaaaagaatcaattaaactgaatatcgaagaactcaaaacagcactttccaaagtggattc |
225 |
Q |
| |
|
|||||||||| | ||||||||| |||||||||||||| |||||||||| ||| |||| ||||||||||||||||| || || ||||||| ||||| || |
|
|
| T |
36128069 |
gcattgctgatctgttgaaggaatccaagggagatgttaaaaaagaatctattgaactcaatatcgaagaactcaagaccgctttttccaatgtggactc |
36128168 |
T |
|
| Q |
226 |
tcagatgaaatttctctctgct |
247 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
36128169 |
cgagatgaaatttctccctgct |
36128190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University