View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11585_low_32 (Length: 254)
Name: NF11585_low_32
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_32 |
 | |
|
| [»] scaffold0384 (1 HSPs) |
| | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 41075445 - 41075219
Alignment:
| Q |
17 |
agaaactaaatttgtgaatattaaaatcattgctgtaaggccacatgctttgttgagatgtccataaaaacttgcctcatcattgtcgatccagtcttca |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41075445 |
agaaactaaatttgtgaatatcaaaatcattgctgtaaggccacatgctttgttgagatgtccagaaaaacttgcctcatcattgtcgatccagtcttca |
41075346 |
T |
|
| Q |
117 |
tcttcgccccattcatcataacattcattcaacggccattcctcataagtactcatatcaacccaaggacgaaccatcccaccatatcggatcactaaga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
41075345 |
tcttcgccccattcatcataacattcattcaaccgccattcctcataagtactcatatcaacccaacgaagaaccatcccaccatatcggatcactaaga |
41075246 |
T |
|
| Q |
217 |
ggatcatcggaatcatctgagctctct |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
41075245 |
cgatcatcggaatcatctgagctctct |
41075219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 3665 - 3752
Alignment:
| Q |
17 |
agaaactaaatttgtgaatattaaaatcattgctgtaaggccacatgctttgttgagatgtccataaaaacttgcctcatcattgtcg |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3665 |
agaaactaaatttgtgaatatcaaaatcattgatgtaaggccacaaactttgttgagatgtccaaaaaaacttgcctcatcattgtcg |
3752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 6226 - 6314
Alignment:
| Q |
17 |
agaaactaaatttgtgaatattaaaatcattgctgtaaggccacatgctttgttgagatgtcc-ataaaaacttgcctcatcattgtcg |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
6226 |
agaaactaaatttgtgaatatcaaaatcattgatgtaaggccacaaactttgttgagatgtccaaaaaaaacttgcctcatcattgtcg |
6314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University