View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_low_33 (Length: 250)
Name: NF11585_low_33
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 5051790 - 5051562
Alignment:
| Q |
20 |
atatggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttctta------atctcacagctccaattcaatgaacgatcagt |
113 |
Q |
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| T |
5051790 |
atatggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagcaataatctcacagctccaattcaatgaacggccagt |
5051691 |
T |
|
| Q |
114 |
ttttcatcaccaatatactttggtccaacaaatgaaagaagaa---aaccagaaaagtagcacttcaattttatctcaaagcataaactcctcgtatcgt |
210 |
Q |
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| T |
5051690 |
tcttcatcaccaatatactttggtccaacaaatgaaagaagaagaaaaccagaaaagtagcacttcaattttatctcaaagcgtaaactcctcgtatggt |
5051591 |
T |
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| Q |
211 |
tgtcatccaatctccatctctctgctcct |
239 |
Q |
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| T |
5051590 |
tctcatccaatctccatctttctactcct |
5051562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 51273578 - 51273805
Alignment:
| Q |
20 |
atatggagtcgtgtc-catacaagacaggagtgagatgcaaatccatcgcaaagcgcttctta------atctcacagctccaattcaatgaacgatcag |
112 |
Q |
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|||||||||||||| | |||||||||| |||||| |||||||||||| ||||||| |||||| ||||||||||||||||||| |||||||||| |
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| T |
51273578 |
atatggagtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttcttagctttaatctcacagctccaattcattgaacgatcaa |
51273677 |
T |
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| Q |
113 |
tttttcatcaccaatatactttggtccaacaaatgaaag---aagaaaaccag-aaaagtagcacttcaattttatctcaaagcataaactcctcgtatc |
208 |
Q |
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|| ||||||||| |||||||| ||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||| |||||| ||| | || |
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| T |
51273678 |
ttcttcatcacc---atactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaaagcgtaaacttctcatttc |
51273774 |
T |
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| Q |
209 |
gttgtcatccaatctccatctctctgctcct |
239 |
Q |
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||| ||| | |||||| |||| ||| ||||| |
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| T |
51273775 |
gttctcaccaaatctcaatctttctactcct |
51273805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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