View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_low_41 (Length: 227)
Name: NF11585_low_41
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 24620693 - 24620908
Alignment:
| Q |
1 |
tcaaggcaatcttgatgctcaaatgcgatgaagtaccaatatagacaagacacgtgaacactagtaataaaatatgaaaatagaagtaagtgaatgtaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620693 |
tcaaggcaatcttgatgctcaaatgcgatgaagtaccaataaagacaagacatgtgaacactagtaataaaatatgaaaatagaagtaagtgaatgtaat |
24620792 |
T |
|
| Q |
101 |
tacgtgcgttagtgtcgtatgttggaccttgaatttgatgtgtggggctacataggtcaaatgtagcatgggttcctcgccagattttaatgaatgaaga |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
24620793 |
tacgtgcgtcagtgtcgtatgttggaccttcaatttgatgtatggggctacataggtcaaatgtagcatgggttcctcgccagatttaaatgaatgaaga |
24620892 |
T |
|
| Q |
201 |
cctatttaaggttcat |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
24620893 |
cctatttaaggttcat |
24620908 |
T |
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