View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11585_low_6 (Length: 486)
Name: NF11585_low_6
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 9371283 - 9370830
Alignment:
| Q |
18 |
aaatgagcaaagaaaccctatattacatttgaccacaaacttttccactccatattcttgatgagatccaccatgtcagagaaaaatacttagtgattag |
117 |
Q |
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| T |
9371283 |
aaatgagcaaagaaaccctatattacatttgaccacaaacctttccactccatattcttgatgagatccaccatgtcagagaaaaatacttagtgattag |
9371184 |
T |
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| Q |
118 |
aagaagattttgtatatatataacacttgaaaacaagtacaagatttggatgaaagtgcatgggtatagtacgtggattcctgagtagatttttggaaca |
217 |
Q |
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| T |
9371183 |
aagaagattttgtatatatataacacttggaaacaagtacaagatttggatgaaagtgcatgggtatagtacgtggattcctgagtagatttctggaaca |
9371084 |
T |
|
| Q |
218 |
gagataccaaaactcaaagaataattctacaatttggtccccacaccgaccaatataaccaatgcaaatcagacggatgtttgtaacaaattttcttgga |
317 |
Q |
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| T |
9371083 |
gagataccaaaactcaaagaataattctacaatttggtccccacaccgaccaatataaccaatgcaaatcagacggatgtttgtaacaaattttattgga |
9370984 |
T |
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| Q |
318 |
ttcttttgaagtttataataatacttataggaataataatagaaacattagagaaagggcacactaacatagaaataccatgtgagatacataagtttaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9370983 |
ttcttttgaagtttataataatacttataggaataataatagaaacattagagaaagggcacactaacatagaaataccatgtgagatacataagtttaa |
9370884 |
T |
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| Q |
418 |
ttggttggcatgtcaattaaataatacatttgcatctctatgatagattctgtg |
471 |
Q |
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| T |
9370883 |
ttggttggcatgtcaattaaataatacatttgcatctctatgatagattctgtg |
9370830 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 33820277 - 33820319
Alignment:
| Q |
261 |
caccgaccaatataaccaatgcaaatcagacggatgtttgtaa |
303 |
Q |
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| T |
33820277 |
caccgaccaatataaccaacgcaaatcagacggatgtttgtaa |
33820319 |
T |
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