View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11585_low_8 (Length: 474)
Name: NF11585_low_8
Description: NF11585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11585_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 11 - 460
Target Start/End: Complemental strand, 43506657 - 43506208
Alignment:
| Q |
11 |
gatgaacaaaagtggataattcatgttacggaaagagaaactaaatgtagagaaaatgttgagaatgagaagcgtggttataaagagcttttgcaaaaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506657 |
gatgaacaaaagtggataattcatgttacggaaagagaaactaaatgtagagaaaatgttgagaatgagaagcgtggttataaagagcttttgcaaaaag |
43506558 |
T |
|
| Q |
111 |
atgagatgcatgaagcttatgagaagctacttaaggatgcggagattaggcttgtgaagatttatgagaatgatggtggagatggtaatgatgataatga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506557 |
atgagatgcatgaagcttatgagaagctacttaaggatgcggagattaggcttgtgaagatttatgagaatgatggtggagatggtaatgatgataatga |
43506458 |
T |
|
| Q |
211 |
cgtggttgaagataaggaatgtgaagaacgtgttatgaggatattgcaggagatgcgtgagaaagatggtcagcgtgttgatctttccgggcaacggttg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506457 |
cgtggttgaagataaggaatgtgaagaacgtgttatgaggatattgcaggaggtacgtgagaaagatggtcagcgtgttgatctttccgggcaacggttg |
43506358 |
T |
|
| Q |
311 |
acgatgttgccggaggcggtttgtcaagtttcttccttggttgtgcttaacctctccactaataagctttcggtaacaatgcttacattctaagcatttc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506357 |
acgatgttgccggaggcggtttgtcaagtttcttccttggttgtgcttaacctctccactaataagctttcggtaacaatgcttacattctaagcatttc |
43506258 |
T |
|
| Q |
411 |
attcttttcgttcttatgatggaaggcgtgttcggtgtttgggtgtaatt |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43506257 |
attcttttcgttcttatgatggaaggcgtgttcggtgtttgggtgtaatt |
43506208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University