View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11586_high_1 (Length: 446)

Name: NF11586_high_1
Description: NF11586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11586_high_1
NF11586_high_1
[»] chr5 (7 HSPs)
chr5 (72-266)||(12537076-12537266)
chr5 (18-338)||(12546735-12547048)
chr5 (18-105)||(12531571-12531658)
chr5 (22-101)||(12538681-12538760)
chr5 (22-101)||(9894726-9894804)
chr5 (22-100)||(9866624-9866702)
chr5 (22-60)||(9870064-9870102)
[»] chr4 (1 HSPs)
chr4 (22-95)||(24860629-24860702)
[»] chr2 (3 HSPs)
chr2 (22-100)||(13576431-13576509)
chr2 (22-72)||(34571441-34571491)
chr2 (22-65)||(34562654-34562697)
[»] chr8 (5 HSPs)
chr8 (22-96)||(38807079-38807153)
chr8 (22-96)||(43479645-43479719)
chr8 (22-96)||(38799578-38799652)
chr8 (22-96)||(38821865-38821939)
chr8 (22-62)||(26592251-26592291)
[»] chr7 (4 HSPs)
chr7 (18-97)||(3929931-3930010)
chr7 (22-97)||(3928579-3928654)
chr7 (22-65)||(21317657-21317700)
chr7 (51-95)||(21320195-21320239)
[»] scaffold0197 (1 HSPs)
scaffold0197 (22-65)||(31094-31137)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 72 - 266
Target Start/End: Original strand, 12537076 - 12537266
Alignment:
Q  72 cagaatcagaggcgagagggcttagatttggttactgtgcttcttgatctataatataggtgttggttgtatttcttagttagggttatgtttagtttca 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||  ||||     ||||||||||||||||  ||||||||||||| ||||||||||||||    
T  12537076 cagaatcagaggcgagagggcttagatttggttacggtgcttcaagatc-----tataggtgttggttgtggttcttagttagggctatgtttagtttca 12537170  T
Q  172 atgtcaaat-aaaattagggtttggtttatgattttgatgttgtttttatattctgtattgaaggttaacctatggttatcttgtaacaatgctct 266  Q
     |||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||||||| |||||||| ||||||||||||    
T  12537171 ctgtcaaataaaaattagggtttggtttatgattttgatgtagttttaatattctgtaatgaaagttaacctattgttatcttttaacaatgctct 12537266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 12547048 - 12546735
Alignment:
Q  18 tgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttggttactgtgcttcttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||       || ||    
T  12547048 tgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcgcagaattagaggcgagagagcttagatttggtta-------tcatg 12546956  T
Q  118 atctataatataggtgttggttgtatttcttagttagggttatgtttagtttcaatgtcaaataaaattagggtttggtttatgattttgatgttgtttt 217  Q
    ||| |   | ||  || || ||||  |||||||||||  ||| ||||| ||||  |||| || |||| |||||||  | || || || || |||| |||     
T  12546955 atccaagttctac-tggtgcttgtggttcttagttagttttaggtttaatttctctgtctaacaaaaatagggttcagattctggttatgttgtttttta 12546857  T
Q  218 tatattc-tgtattgaaggttaacctatggttatcttgtaacaatgctcttttctactgtttcttaattgaattgaatatcattttcctaagatctttgt 316  Q
    ||| ||  |||  |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  12546856 tatttttatgttgtgaaggttaacccatggttatcttgtgacaatgctctgttctactgtttcttaattgaattgaatatcattttcctatgttctttgt 12546757  T
Q  317 taataattgtcaattttatttg 338  Q
    ||||||||||||||||||||||    
T  12546756 taataattgtcaattttatttg 12546735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 12531571 - 12531658
Alignment:
Q  18 tgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttggtta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12531571 tgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttggtta 12531658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 12538681 - 12538760
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttg 101  Q
    |||||||||||||| ||||||||||||||||| | |||||||||| |||||| |||||||||| |||| |||||||||||    
T  12538681 attcatgctaagagagttactatcatgcctaaaggtattcaactcactcgcataatcagaggcaagagtgcttagatttg 12538760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 9894726 - 9894804
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttg 101  Q
    |||||||||||| | |||||||| ||| | ||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  9894726 attcatgctaagtgagttactattatggc-aaggatattgaacttgctcgcagaatcagaggcgagagggcttagatttg 9894804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 9866702 - 9866624
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagattt 100  Q
    |||||||||||||| |||||||| |||||| |||| || |||||||||   |||||||||||| |||||||||||||||    
T  9866702 attcatgctaagagagttactattatgcctgaggacatccaactcgcttaaagaatcagaggccagagggcttagattt 9866624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 9870064 - 9870102
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatatt 60  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  9870064 attcatgctaagagagttactattatgcctaaggatatt 9870102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 24860629 - 24860702
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggctta 95  Q
    |||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24860629 attcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta 24860702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 13576431 - 13576509
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagattt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||  | |||||||||||||| |||||||||||||    
T  13576431 attcatgctaagagggttactattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagggcttagattt 13576509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 34571491 - 34571441
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgc 72  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||||    
T  34571491 attcatgctaagagggttaccattatgcctaaggatattcaacttgctcgc 34571441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 34562697 - 34562654
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaact 65  Q
    |||||||||||||||||||| || ||||||||||||||||||||    
T  34562697 attcatgctaagagggttaccattatgcctaaggatattcaact 34562654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 38807079 - 38807153
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 96  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||  | ||||||||||||||||||||||||    
T  38807079 attcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgagagggcttag 38807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 43479719 - 43479645
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 96  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||  | ||||| ||||||||||||||||||    
T  43479719 attcatgctaagagggttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgagagggcttag 43479645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 38799578 - 38799652
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 96  Q
    |||||||||||||| ||||| |||||||||||||| ||||| || ||  | ||||||||||| ||||||||||||    
T  38799578 attcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag 38799652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 38821939 - 38821865
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttag 96  Q
    |||||||||||||| ||||| |||||||||||||| ||||| || ||  | ||||||||||| ||||||||||||    
T  38821939 attcatgctaagagagttacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag 38821865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 26592251 - 26592291
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattca 62  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  26592251 attcatgctaagcgtgttactatcatgcctaaggatattca 26592291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 3930010 - 3929931
Alignment:
Q  18 tgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttaga 97  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||| ||  | |||||||||||||| ||||||||||    
T  3930010 tgccattcatgctaagagagttactattatgccgaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 3929931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 3928654 - 3928579
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttaga 97  Q
    |||||||||||||| ||||||||  |||||||||||||| |||| ||  ||||||||||  ||||||| |||||||    
T  3928654 attcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttaga 3928579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 21317657 - 21317700
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaact 65  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  21317657 attcatgctaagagagttactattatgcctaaggatattcaact 21317700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 21320195 - 21320239
Alignment:
Q  51 taaggatattcaactcgctcgcagaatcagaggcgagagggctta 95  Q
    ||||||||||||||| ||| ||| ||||||||| |||||||||||    
T  21320195 taaggatattcaacttgcttgcataatcagaggtgagagggctta 21320239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 31094 - 31137
Alignment:
Q  22 attcatgctaagagggttactatcatgcctaaggatattcaact 65  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  31094 attcatgctaagagagttactattatgcctaaggatattcaact 31137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University