View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11586_high_6 (Length: 228)
Name: NF11586_high_6
Description: NF11586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11586_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 21181269 - 21181428
Alignment:
| Q |
40 |
gctaccccaccaatggtaattgtccaactactccaatattggcaagcctatcagcacttatatccagtatgccttttgagaagaaacaaattagtctggt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21181269 |
gctaccccaccaatggtaattgtccaactactccaagattgacaagcctatcaacagttatatccaatatgccttttgagaagaaacaaattagtctggt |
21181368 |
T |
|
| Q |
140 |
taccaatatgagatacataaagaacaatttgcattaaaccttttcaaatggatataaaaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21181369 |
taccaatatgagatacataaagaacaatttgcattaaactttttcaaatggatataaaaa |
21181428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21180545 - 21180591
Alignment:
| Q |
1 |
gtcaatttctaatgaaatcattcaaaacacttggggaatgctacccc |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21180545 |
gtcaatttctaatgaaatcattcaaaacacttggggaatgctacccc |
21180591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University