View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11586_low_2 (Length: 362)
Name: NF11586_low_2
Description: NF11586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11586_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 31399715 - 31400041
Alignment:
| Q |
19 |
agagactcaactaaacaatttggcttcaattactcaagtaattgatccaaaacttcatcaacatataggtatttccttgaatttgttcttcaatgttata |
118 |
Q |
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| T |
31399715 |
agagactcaactaaacaatttggcttcaattactcaagtaattgatccaaaacttcatcaacatataggtatttccttgaatttgttcttcaatgttata |
31399814 |
T |
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| Q |
119 |
tcatattgttttgacatttaaaggttcaatattttcctccatatattttgttacatgccctttttatattctgtagcaaaaaatttcataactacatgtt |
218 |
Q |
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| T |
31399815 |
tcatattgttttgacatttaaaggttcaatattttcctccatatattttgttacatgccctttttatattctgtagcaaaaaaattcataacttcatgtt |
31399914 |
T |
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| Q |
219 |
cttaaaaatggaaagtaactatgaactgtcttttaatgttggtgcacagagcatattggtggaggtgactatctgttcgcttttcggatgttaatggttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31399915 |
cttaaaaatggaaagtaactatgaactgtcttttaatgttggtgcacagagcatattggtggaggtgactatctgttcgcttttcggatgttaatggttc |
31400014 |
T |
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| Q |
319 |
tatttcgtcgagaattctccttctgtg |
345 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31400015 |
tatttcgtcgagaattctccttctgtg |
31400041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 224 - 345
Target Start/End: Complemental strand, 34940645 - 34940524
Alignment:
| Q |
224 |
aaatggaaagtaactatgaactgtcttttaatgttggtgcacagagcatattggtggaggtgactatctgttcgcttttcggatgttaatggttctattt |
323 |
Q |
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| T |
34940645 |
aaatggaaagtaacaatgtactgtcttttaattttggagaacagaacatattggtggaggtgactatgtatttgcttttcggatgcttatggttctgttt |
34940546 |
T |
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| Q |
324 |
cgtcgagaattctccttctgtg |
345 |
Q |
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| T |
34940545 |
cgtcgagaattttccttttgtg |
34940524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 34940904 - 34940836
Alignment:
| Q |
24 |
ctcaactaaacaatttggcttcaattactcaagtaattgatccaaaacttcatcaacatataggtattt |
92 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34940904 |
ctcaactaagtaatttggcttcaattactcaagtaattgatccaaaacttcataaacatataggtattt |
34940836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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