View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11587_high_10 (Length: 270)
Name: NF11587_high_10
Description: NF11587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11587_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 2653431 - 2653692
Alignment:
| Q |
9 |
gagatgaacataggaagggagtagcaaacaaaagttatattgcaatttgaaatgaattaattttcatttaacagaaaatttaaagtcacaaattgaagtt |
108 |
Q |
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| T |
2653431 |
gagaagaacataggaagggagtagcaaacaaaagttatattgcaatttgaaatgaattaattttcatttaacagaaaatttaaagtcacaaattgaagtt |
2653530 |
T |
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| Q |
109 |
acttagtctgttgtaatcattgattacatatccacaaaaaataaattgataaaatagaaataacatcaatctagctattccaattgagttataaatgttt |
208 |
Q |
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| T |
2653531 |
acttagtctgttgtaatcattgattacatatccacaaaaaataaattgataaaatagaaataacatcaatctagctattccaattgagttataaatgttt |
2653630 |
T |
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| Q |
209 |
actgcttacataattaaaatcctaaatctaaaacatcaagtaaggatttgagaagatgcaat |
270 |
Q |
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| T |
2653631 |
actgcttacataattaaaatcctaaatctaaaacatcaagtaaggatttgagaagatgcaat |
2653692 |
T |
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