View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11587_high_12 (Length: 262)
Name: NF11587_high_12
Description: NF11587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11587_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 35887507 - 35887332
Alignment:
| Q |
75 |
caaggaaaatgattttggccacaatgcagtgtttttggaaaatcatcagtctaaatggccacaatgcgcttatattttaaaatatacatacaaaaaactc |
174 |
Q |
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| T |
35887507 |
caaggaaaatgattttggccacaatcaagtgtttttggaaaatcatcggtctaaatggccacaatgcgcttatattttaaaatatacatacaaaaaactc |
35887408 |
T |
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| Q |
175 |
atctaaaaataatacacacatatatgattatatttccctttgactcactcttgtggatcattcagattttcatctc |
250 |
Q |
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| T |
35887407 |
atctgaaaataatacacacatatatgattatatttccctttgactcactcttgtggatcattcagattttcatctc |
35887332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35887633 - 35887559
Alignment:
| Q |
1 |
taaagtgtggtgtttggagttcgaatctcaacatttacatataacaatgaattttccctgtcaattgagctatgc |
75 |
Q |
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| T |
35887633 |
taaagtgtggtgtttggagttcgaatctcaacctttatatatagcaataaattttccatgtcaattaagctatgc |
35887559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 35903531 - 35903478
Alignment:
| Q |
75 |
caaggaaaatgattttggccacaatgcagtgtttttggaaaatcatcagtctaaa |
129 |
Q |
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| T |
35903531 |
caaggaaaataattttggccacaatgcagtg-ttttggaaaatcatcagtctaaa |
35903478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 35879903 - 35879858
Alignment:
| Q |
86 |
attttggccacaatgcagtgtttttggaaaatcatcagtctaaatg |
131 |
Q |
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| T |
35879903 |
attttggccacaatgtagtgtttttggaaaatcatcaatctaaatg |
35879858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 36045905 - 36045834
Alignment:
| Q |
3 |
aagtgtggtgtttggagttcgaatctcaacatttacatataacaatgaattttccctgtcaattgagctatgc |
75 |
Q |
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| T |
36045905 |
aagtgaggtgtccggagttcgaatctcaacccctgcatataacaatgcatgt-ccctgtcaattgagctatgc |
36045834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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