View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11587_high_13 (Length: 257)
Name: NF11587_high_13
Description: NF11587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11587_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 24406385 - 24406228
Alignment:
| Q |
2 |
ctccacctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaa |
101 |
Q |
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| T |
24406385 |
ctccacctccaccatctccttcacctcctccatatcatccctaccgctataactaacccccacctcccgcgtattaagctttcggatataacaacttgaa |
24406286 |
T |
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| Q |
102 |
attttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24406285 |
attttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
24406228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 24420358 - 24420158
Alignment:
| Q |
2 |
ctccacctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaa |
101 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||||| ||| ||| | ||||| |
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| T |
24420358 |
ctccacctccaccatctccatcacctcctccatatcatccctacctctacaactcacccccgcctcccatctattaagcttccggctat---tatttgaa |
24420262 |
T |
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| Q |
102 |
attttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgttgataataaataaaacagtctactctccacattgaattaaga |
201 |
Q |
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| T |
24420261 |
aaaatttcaatgaattatattcagcattgttgtggttaatttgtattcaatcttttgtt-------aataaaaaagtctatgctttacagtgaattaaga |
24420169 |
T |
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| Q |
202 |
gccttattttg |
212 |
Q |
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| T |
24420168 |
gccttattttg |
24420158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 24471268 - 24471402
Alignment:
| Q |
8 |
ctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaagctttcggatataacaacttgaaattttt |
107 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||| | ||||||||| |||||| |||||||||| ||| ||| | ||||||||||| |
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| T |
24471268 |
ctccaccatctccatcacctcctccatatcatccctacctctacagctcacccccgcctcccatctattaagcttccggctat---catttgaaattttt |
24471364 |
T |
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| Q |
108 |
tcaatgaattatgttcaacattgttgtggttaatttgt |
145 |
Q |
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|||||||||||| |||| |||||||||||||||||||| |
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| T |
24471365 |
tcaatgaattatattcagcattgttgtggttaatttgt |
24471402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 24476002 - 24475844
Alignment:
| Q |
2 |
ctccacctccaccatctccttcacctcctcgatatcatccctacctctataactcacccccacctcccgcgtattaag-ctttcggatataacaacttga |
100 |
Q |
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|||| ||||| |||||||| | |||||||| || |||| || | ||||| ||||||||||| ||||||| ||||||| ||| ||| |||| | |||| |
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| T |
24476002 |
ctcctcctcccccatctccataacctcctccatctcattccgatctctacaactcacccccgcctcccgtctattaaggcttccggctatagttatttga |
24475903 |
T |
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| Q |
101 |
aattttttcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
159 |
Q |
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||||||||||| ||||||| |||| ||||||| |||||||||||||| |||||||||| |
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| T |
24475902 |
aattttttcaaagaattatattcagcattgttctggttaatttgtatcgaagcttttgt |
24475844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 24406487 - 24406458
Alignment:
| Q |
2 |
ctccacctccaccatctccttcacctcctc |
31 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24406487 |
ctccacctccaccatctccttcacctcctc |
24406458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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