View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11587_high_2 (Length: 696)

Name: NF11587_high_2
Description: NF11587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11587_high_2
NF11587_high_2
[»] chr3 (1 HSPs)
chr3 (19-696)||(2653660-2654334)
[»] chr1 (1 HSPs)
chr1 (148-219)||(25608805-25608874)


Alignment Details
Target: chr3 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 19 - 696
Target Start/End: Complemental strand, 2654334 - 2653660
Alignment:
Q  19 cctaatattgtattacatttatataattcacaatcatgcactgcattagagggtaaatagttgtattttcgaaatcataattagaattttgatgtttgcc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  2654334 cctaatattgtattacatttatataattcacaatcatgcactgcattagagggtaactacttgtattttcgaaatcataattagaattttgatgtctgcc 2654235  T
Q  119 aacggttcttttgacgttcctattacgtggtaattctttatatagacatagtgaccaccatgataccactcaaagcgatcgtataaccttcattaagtac 218  Q
    | |||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||    
T  2654234 agcggttcttttgacgttcctatggcgtggtaattctttatatagacatagtgaccaccgtgataccactcaaagcgatcgta--accttcattaagtac 2654137  T
Q  219 cacatccatgataaaattctgttatgttcatattgttttgtgcaagatatgaggaaaacagtatgaaatttgtgcatcttatagcaaacattgcaacaaa 318  Q
    ||||||||||||||| || ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  2654136 cacatccatgataaagttatgttcaattcatattgttttgtgcaagatatgaggaaaacagtatgaaatttgtgcatcttatagcaaacattgcaacgta 2654037  T
Q  319 catactaatgactaagagttaatgagagaaactgcatcttttccctaatttaattgagctcagcaaaatctcatttccgctgatttataa-aagaaagat 417  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  2654036 catactaatgactaagagttaatgagagaaactgcatctttttcctaatttaattgagctcagcaaaatctcatttccgcagatttataataagaaagat 2653937  T
Q  418 ataataaaaacaaattaaggaccctttgtacaagctttttctgtcttccacaatgaggaattcaagtccaaaagttggaaacttcagtatgtttattata 517  Q
    | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  2653936 acaataaaaacaaattaaggaccctttgtacaagatttttttgtcttccacaatgaggaattcaagtccaaaagttggaaacttcagtatgtttat---- 2653841  T
Q  518 tatttggtcactttccttgcggaatctgtaaatttttaagacataaaactgtgtttgaaatctgcagaaaatgatagataggcggtatttaaacaaagat 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2653840 tatttggtcactttccttgcggaatctgtaaatttttaagacataaaacggtgtttgaaatctgcagaaaatgatagataggcggtatttaaacaaagat 2653741  T
Q  618 tatgtatattgcttgtgc--atatatctatatctcaatgttgcttcaaattgcatcttttcaaatccttactttatgtttt 696  Q
    | ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  2653740 tctgtatattgcttgtgcatatatatctatatctcaatgttgcttcaaattgcatcttctcaaatccttacttgatgtttt 2653660  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 25608805 - 25608874
Alignment:
Q  148 gtaattctttatatagacatagtgaccaccatgataccactcaaagcgatcgtataaccttcattaagtacc 219  Q
    ||||||||||||||| ||||||||||||||  |||| ||||||||||  ||  |||||||||||||||||||    
T  25608805 gtaattctttatatacacatagtgaccaccgcgatatcactcaaagctttc--ataaccttcattaagtacc 25608874  T

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