View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11587_high_3 (Length: 595)
Name: NF11587_high_3
Description: NF11587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11587_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 16 - 582
Target Start/End: Complemental strand, 37355488 - 37354915
Alignment:
| Q |
16 |
aataggatatccttttatttcattcttcttttaagtgtttgttagtattttctgctgggaaaataccaggaagacgttcaaattatgattgatctttaca |
115 |
Q |
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| T |
37355488 |
aataggatatccttttatttcattcttcttttaagtgtttgttagtattttctgctgggaaaataccaggaagacgttcaagttatgattgatctttaca |
37355389 |
T |
|
| Q |
116 |
acatgatgcttcaaatattttacactgttcgaatggtggcttacatcatacaacgtgtttagcaacagtctcaaacatcctcatgtgaagcaacattgtt |
215 |
Q |
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| T |
37355388 |
acatgatgcttcaaatattttacactgttcgaatggtggcttacatcatacaacgtgtttagcaacagtctcaaacatcctcatgtgaagcaacattgtt |
37355289 |
T |
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| Q |
216 |
aaaaactaaaacaatttcctagcatgcttcctacctcaaattcttctt-------ataaatgttcttgatggtagctttagaacccactcctctttcttt |
308 |
Q |
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| T |
37355288 |
aaaaactaaagcaatttcctagcatgcttcctacctcaaattcttcttataagttataaatgttcttgatggtagctttagaacccactcctctttcttt |
37355189 |
T |
|
| Q |
309 |
aaaagatttcaaggagtcccactctctttttaaccttgtcttttttctaataatatgttctttgattcaacaatgctagctccttcacactgaattttga |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37355188 |
aaaagatttcaaggagtcccactctctttttaaccttgtcttttttctaataatatcttctttgattcaacaatgctagctccttcacactgaattttga |
37355089 |
T |
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| Q |
409 |
ttcnnnnnnnnnnnnnnncttgcaaggaagcaacaatatccatcattaatttctaaacctcctcaagtgattagaatctttgttccttctacaactttgc |
508 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37355088 |
ttcttttttagattttttcttgcaaggaagcaacaatatccatcattaatttctaaacctcctcaagtgattagaatctttgttccttctacaactttgc |
37354989 |
T |
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| Q |
509 |
tcccctaaagtatgttttctacgcagtgagataaggttgctaacatcactttaaaacatacacaagtttgatgt |
582 |
Q |
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| T |
37354988 |
tcccctaaagtatgttttctatgcagtgagataaggttgctaacatcactttataacatacacatgtttgatgt |
37354915 |
T |
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