View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11587_low_1 (Length: 871)

Name: NF11587_low_1
Description: NF11587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11587_low_1
NF11587_low_1
[»] chr5 (2 HSPs)
chr5 (18-855)||(6232341-6233174)
chr5 (161-855)||(6221699-6222398)


Alignment Details
Target: chr5 (Bit Score: 756; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 18 - 855
Target Start/End: Original strand, 6232341 - 6233174
Alignment:
Q  18 attcctagcttaatagaaaagaagaatgaaccaaagtgatttattttttattcactccataattcatttgaaataggaggcaatgtcgtacgagtagaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  6232341 attcctagcttaatagaaaagaagaatgaaccaaagtgatttattttttattcactccat---tcatttgaaataggaggcaatgtcgtacgagtagaag 6232437  T
Q  118 aaacacaatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6232438 aaacacaatgagcatattgaagtaagtttttggagaaggtgaagacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggag 6232537  T
Q  218 ataaacggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataattcgt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  6232538 ataaacggatgtttgaagagcatatctgctgtccatcttctcaaaggatccttaatgaaacacttttctaaaaaatcttttccttcttgtgataattcct 6232637  T
Q  318 ctggaatctttggcaattcttctccaaccccaattcgaatcgtcaacattaacatatctgactcattccat---gcgggttctccggtaatcatctccac 414  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||   ||||||||||||||||||||||||||    
T  6232638 ctggaatttttggcaattcttctccaacaccaattcgaatcgtcaacatcaacatatctgattcattccatgcggcgggttctccggtaatcatctccac 6232737  T
Q  415 gacggcgcaaccaagagcccatatatcggctggcgattcataaacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccac 514  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6232738 gacggcgcaaccaagagcccatatatcggctgacgattcatacacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccac 6232837  T
Q  515 ttttcaccttgttctacacctatctctttcgcaaggccgaaatctgaaatcttaatgtttccgttctcgaatacgagaatgttgggcaacttcaaatcac 614  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6232838 ttttcaccttgttctacacctgtctctttcgcaagcccgaaatctgaaatcttaatgtttccgttctcgaatacgagaatgttgggcaacttcaaatcac 6232937  T
Q  615 aatgaacaaacccttttttgtgaatatacttgagtccttcaactaccgacctcgtataattaacggcggacgaggttatccgggagcttaccaccatgtt 714  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  6232938 aatgaacaaacccttttttgtgaatatacttgagtccttcaactaccgacctcgta----taacggcggacgaggttatccgggagcttaccaccatgtt 6233033  T
Q  715 tctcgagttgatcggagagagttccaccgctagcgtattctagaaaaatattgtaatactcttcatcgttttcaacagttttgtcttggccaaaacactt 814  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6233034 tctcgagttgatcggagagagttccaccgctagcgtattctagaaaaatattgtaatactcttcatcgttttcaacagttttgtcttggccaaaacactt 6233133  T
Q  815 gataacatgtggggatgatcctaaacgatcgagtatttgtt 855  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6233134 gataacatgtggggatgatcctaaacgatcgagtatttgtt 6233174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 161 - 855
Target Start/End: Original strand, 6221699 - 6222398
Alignment:
Q  161 gacaatggcaactcatcaactaactcatttacaactgaaacagtttcaacatcggagataaacggatgtttgaagagcatatctgctgtccatcttctca 260  Q
    ||||||||||||||||  |  ||||| || || | ||||||||||||| || | |||||||||  |||||| || ||||| ||||| ||||||||| |      
T  6221699 gacaatggcaactcattgatcaactctttcaccaatgaaacagtttcatcacctgagataaactcatgtttcaaaagcatctctgccgtccatctttttg 6221798  T
Q  261 aaggatccttaatgaaacacttttctagaaaatcttttccttcttgtgataattcgtctggaatctttggcaattcttctccaaccccaattcgaatcgt 360  Q
    |||||||||| |||||||||||||| ||||||||||||||  ||||||||||||| |||||||||   ||  |||| ||| |  |||||||||||||       
T  6221799 aaggatccttgatgaaacacttttcgagaaaatcttttccgacttgtgataattcatctggaatcaacggtgattcgtcttctgccccaattcgaattaa 6221898  T
Q  361 caacattaacatatctga----ct-----cattccatgcgggttctccggtaatcatctccacgacggcgcaaccaagagcccatatatcggctggcgat 451  Q
    ||||    |||||| |||    ||     ||||||||||  |||  || |||  ||||||||| |  ||||||||||||||||||||||| || || |||    
T  6221899 caacgaccacatatttgaaccgctgcttacattccatgcatgtttacccgtagccatctccacaatagcgcaaccaagagcccatatatctgccggtgat 6221998  T
Q  452 tcataaacactatcattcactgcttctggtgacataatcatcggagttcctctcggttgccacttttcaccttgttctacacctatctctttcgcaaggc 551  Q
    ||||||||||| || ||||| |||||||||||||||  ||  |||||||| ||   || | | ||| |||| |||| || |||| |||| || |||||||    
T  6221999 tcataaacactctcgttcaccgcttctggtgacatatacaatggagttcccctacattccaattttccaccatgttttagacctttctccttagcaaggc 6222098  T
Q  552 cgaaatctgaaatcttaatgtttccgttctcgaatacgagaatgttgggcaacttcaaatcacaatgaacaaacccttttttgtgaatatacttgagtcc 651  Q
    | ||||| ||||||||||  |   | ||||| ||||| ||||||||  | | ||||| ||| || |||||||| || ||||  |||| ||  ||||||||    
T  6222099 caaaatccgaaatcttaacttcgtcattctcaaatacaagaatgttttgtagcttcacatcgcagtgaacaaaaccattttcatgaacatgtttgagtcc 6222198  T
Q  652 ttcaactaccgacctcgtataattaacggcggacgaggttatccgggagcttaccaccatgtttctcgagttgatcggagagagttccaccgctagcgta 751  Q
    || ||| || || || ||     ||||| || ||||| || || || | |||||||||||| |||| |||||||||||||||||| || ||   ||| ||    
T  6222199 ttgaacgactgatcttgt----gtaacgccgaacgagattctctggtaacttaccaccatgattcttgagttgatcggagagagtaccgccagcagcata 6222294  T
Q  752 ttctagaaaaatattgtaatactcttcatcgttttcaacagttttgtcttggccaaaacacttgataacatgtggggatgatcctaaacgatcgagtatt 851  Q
    ||||||||||||||| ||| |||||||| | ||||| | |||||  || || |||||| |||| |||| ||||||||||||||||||||  || ||||||    
T  6222295 ttctagaaaaatattataacactcttcaccattttcgaaagtttgatcatgaccaaaatacttaataatatgtggggatgatcctaaactttcaagtatt 6222394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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