View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11587_low_14 (Length: 239)
Name: NF11587_low_14
Description: NF11587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11587_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 30871631 - 30871565
Alignment:
| Q |
112 |
acatttgtagtgaaatctttaaagcaggggagcttaccattatatgtgccttgtgatttaacaattt |
178 |
Q |
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| T |
30871631 |
acatttgtagtgaaatctttaaagcaggggagcttaccattatatgtgccttgtgatttaacaattt |
30871565 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 30871663 - 30871626
Alignment:
| Q |
35 |
ctcaaaatttgacatataaaatgaaaagaggagtacattt |
74 |
Q |
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| T |
30871663 |
ctcaaaatttgacata--aaatgaaaagaggagtacattt |
30871626 |
T |
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