View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11587_low_4 (Length: 568)

Name: NF11587_low_4
Description: NF11587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11587_low_4
NF11587_low_4
[»] chr4 (8 HSPs)
chr4 (13-80)||(24509395-24509462)
chr4 (332-430)||(34371576-34371678)
chr4 (13-80)||(21025598-21025665)
chr4 (13-60)||(26909391-26909438)
chr4 (13-56)||(44257737-44257780)
chr4 (15-61)||(47288098-47288144)
chr4 (13-61)||(10994160-10994207)
chr4 (13-61)||(38519809-38519857)
[»] chr2 (11 HSPs)
chr2 (500-550)||(24382579-24382629)
chr2 (13-69)||(10833653-10833709)
chr2 (13-69)||(9048409-9048465)
chr2 (14-61)||(6336268-6336315)
chr2 (332-418)||(36718868-36718957)
chr2 (13-79)||(13711374-13711440)
chr2 (12-61)||(12784405-12784454)
chr2 (12-57)||(45259291-45259336)
chr2 (13-61)||(14328397-14328445)
chr2 (13-61)||(31635818-31635865)
chr2 (13-61)||(43356305-43356352)
[»] chr3 (12 HSPs)
chr3 (13-78)||(48152293-48152358)
chr3 (332-389)||(44021965-44022021)
chr3 (13-69)||(536283-536339)
chr3 (13-63)||(41670589-41670639)
chr3 (13-61)||(37894250-37894298)
chr3 (13-61)||(45186559-45186607)
chr3 (13-69)||(45693754-45693810)
chr3 (16-69)||(29030817-29030870)
chr3 (14-55)||(33796288-33796329)
chr3 (13-61)||(26452730-26452778)
chr3 (13-61)||(29573363-29573411)
chr3 (493-549)||(44021826-44021882)
[»] scaffold0416 (1 HSPs)
scaffold0416 (13-69)||(6866-6922)
[»] chr7 (17 HSPs)
chr7 (13-80)||(45815263-45815330)
chr7 (13-71)||(33776365-33776423)
chr7 (13-78)||(17945067-17945131)
chr7 (90-145)||(8955971-8956026)
chr7 (13-79)||(35600669-35600735)
chr7 (13-78)||(36703879-36703944)
chr7 (13-61)||(6269382-6269430)
chr7 (13-61)||(33212058-33212105)
chr7 (13-61)||(42584818-42584866)
chr7 (13-61)||(46829495-46829543)
chr7 (13-55)||(44496810-44496852)
chr7 (13-42)||(19880313-19880342)
chr7 (13-62)||(41430159-41430208)
chr7 (13-61)||(1471298-1471346)
chr7 (13-61)||(2756937-2756984)
chr7 (13-61)||(5174559-5174607)
chr7 (13-61)||(34108862-34108910)
[»] chr5 (8 HSPs)
chr5 (332-430)||(4820568-4820668)
chr5 (13-61)||(6758798-6758846)
chr5 (13-61)||(22098271-22098319)
chr5 (13-61)||(6940157-6940205)
chr5 (13-69)||(9742387-9742443)
chr5 (13-61)||(18695334-18695382)
chr5 (13-61)||(29807010-29807057)
chr5 (13-61)||(38293366-38293414)
[»] chr1 (11 HSPs)
chr1 (13-78)||(43560203-43560268)
chr1 (13-78)||(49660178-49660243)
chr1 (13-79)||(37516522-37516588)
chr1 (403-452)||(42383979-42384029)
chr1 (13-69)||(39712386-39712442)
chr1 (332-389)||(42384028-42384086)
chr1 (439-550)||(36386150-36386255)
chr1 (14-47)||(46758399-46758432)
chr1 (13-61)||(1689407-1689455)
chr1 (13-61)||(30536007-30536055)
chr1 (13-61)||(52437510-52437558)
[»] chr8 (10 HSPs)
chr8 (13-69)||(39692303-39692359)
chr8 (13-61)||(25830253-25830301)
chr8 (477-516)||(4336151-4336190)
chr8 (13-80)||(43285970-43286037)
chr8 (13-79)||(16808579-16808644)
chr8 (17-61)||(67172-67216)
chr8 (13-61)||(25987794-25987842)
chr8 (13-61)||(33100476-33100524)
chr8 (13-61)||(35818953-35819000)
chr8 (13-61)||(42786667-42786715)
[»] chr6 (4 HSPs)
chr6 (13-69)||(10335558-10335614)
chr6 (212-250)||(28975341-28975381)
chr6 (13-61)||(1376380-1376428)
chr6 (13-61)||(1384128-1384176)
[»] scaffold0053 (1 HSPs)
scaffold0053 (14-59)||(12515-12560)
[»] scaffold0432 (1 HSPs)
scaffold0432 (13-61)||(6527-6575)


Alignment Details
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 24509395 - 24509462
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctcttt 80  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  24509395 gtgagtatgagagataaagttgtcacatagattgtcacaaaatggttgtcaaaatatcatttctcttt 24509462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 332 - 430
Target Start/End: Original strand, 34371576 - 34371678
Alignment:
Q  332 ttcactctcctccatctctctcccacc-acttgcagg--caacctcacaatctggaattcatgttgctttaccacactcctcaccctca-tcagcctcca 427  Q
    |||||||||||||||||||||| |||| || ||  ||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  34371576 ttcactctcctccatctctctctcacccacctgttggaccaatctcacaatctcgaatttatgttgctttaccacactcctcaccctcattcaacctcca 34371675  T
Q  428 tga 430  Q
    |||    
T  34371676 tga 34371678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 21025665 - 21025598
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctcttt 80  Q
    ||||||| ||||||||||||||||||||| ||||| | |||||||||||||| |||| | ||||||||    
T  21025665 gtgagtaagagagataaagttgtcacataaattgtcacaaaatggttgtcaaaatatcatttctcttt 21025598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 26909438 - 26909391
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttg 60  Q
    ||||||||||||||||||||| ||||||||||||| | ||||| ||||    
T  26909438 gtgagtatgagagataaagttctcacatagattgtcacaaaatagttg 26909391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 44257737 - 44257780
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatg 56  Q
    |||||||||||||| |||||||||||| | ||||||||||||||    
T  44257737 gtgagtatgagagagaaagttgtcacaaaaattgttagaaaatg 44257780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 47288144 - 47288098
Alignment:
Q  15 gagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||| |||||||||||| | ||||||| |||||||||||    
T  47288144 gagtatgagagagaaagttgtcacaaaaattgttacaaaatggttgt 47288098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 10994160 - 10994207
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    ||||||||||||||||||||||||| | ||||||| | |||||||||||    
T  10994160 gtgagtatgagagataaagttgtca-aaagattgtcacaaaatggttgt 10994207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 38519857 - 38519809
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| | ||||| | |||||||||||    
T  38519857 gtgagtatgagagagaaagttgtcacaaaaattgtcaaaaaatggttgt 38519809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 500 - 550
Target Start/End: Original strand, 24382579 - 24382629
Alignment:
Q  500 taaagcctttaaagagcaagagaaaaagatgaagaaaaagataaaacttta 550  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24382579 taaagcctttaaagagcaagagcaaaagatgaagaaaaagataaaacttta 24382629  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 10833653 - 10833709
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatat 69  Q
    |||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||    
T  10833653 gtgagtatgagagataaaattgtcacatagattgtcacaaaatggttgtcaaaatat 10833709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 9048409 - 9048465
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatat 69  Q
    |||| |||||||||||||||||| ||||||||| | | |||||||||||||| ||||    
T  9048409 gtgaatatgagagataaagttgttacatagattatcacaaaatggttgtcaaaatat 9048465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 6336315 - 6336268
Alignment:
Q  14 tgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    ||||||||||||| |||||||||||| |  ||||||||||||||||||    
T  6336315 tgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgt 6336268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 418
Target Start/End: Complemental strand, 36718957 - 36718868
Alignment:
Q  332 ttcactctcctccatctctctcccacc-----acttgcaggcaacctcacaatctggaattcatgttgctttaccacactcctcaccctcat 418  Q
    |||||||||||||||||||||| ||||     ||||||| |||| |||||||||| ||| || || |||||||||||| |||||||||||||    
T  36718957 ttcactctcctccatctctctctcacccaccaacttgca-gcaatctcacaatct-gaaatcctgctgctttaccacagtcctcaccctcat 36718868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 13711374 - 13711440
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctctt 79  Q
    |||| ||||||||||||||||||||| ||| |||| | ||||||| |||||| |||| | |||||||    
T  13711374 gtgaatatgagagataaagttgtcacgtaggttgtcacaaaatgggtgtcaaaatatcatttctctt 13711440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 12784405 - 12784454
Alignment:
Q  12 cgtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    ||||||||||||||| |||||||||||| | ||| ||| |||||||||||    
T  12784405 cgtgagtatgagagagaaagttgtcacaaaaattattataaaatggttgt 12784454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 45259291 - 45259336
Alignment:
Q  12 cgtgagtatgagagataaagttgtcacatagattgttagaaaatgg 57  Q
    ||||||||||||| | |||||||||||| | |||||||||||||||    
T  45259291 cgtgagtatgagataaaaagttgtcacaaaaattgttagaaaatgg 45259336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 14328445 - 14328397
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| |  |||||||||||| |||||    
T  14328445 gtgagtatgagagaaaaagttgtcacaaaagttgttagaaaattgttgt 14328397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 31635818 - 31635865
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||| | || ||||||||||||||||||    
T  31635818 gtgagtatgagagagaaagttgtcaaaaag-ttgttagaaaatggttgt 31635865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 43356352 - 43356305
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    ||||||||||||||||||||||||| | || |||||||||| |||||||    
T  43356352 gtgagtatgagagataaagttgtcaaaaag-ttgttagaaattggttgt 43356305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 48152293 - 48152358
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctct 78  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| | ||||||    
T  48152293 gtgagtatgagagataaagttgtcacatagattgtcacaaaatggttgtcaaaatatcatttctct 48152358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 44022021 - 44021965
Alignment:
Q  332 ttcactctcctccatctctctcccaccacttgcaggcaacctcacaatctggaattca 389  Q
    |||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||    
T  44022021 ttcactctcctccatctctctcccaccacttgta-gcaatctcagaatctggaattca 44021965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 536283 - 536339
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatat 69  Q
    |||||| ||||||||||||||||||||||| |||| | |||||||||||||| ||||    
T  536283 gtgagtgtgagagataaagttgtcacataggttgtcacaaaatggttgtcaaaatat 536339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 41670589 - 41670639
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtca 63  Q
    |||||||||||||||||||||||||| ||| |||| | |||||||||||||    
T  41670589 gtgagtatgagagataaagttgtcacctaggttgtcacaaaatggttgtca 41670639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 37894250 - 37894298
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| |  ||||||||||||||||||    
T  37894250 gtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgt 37894298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 45186559 - 45186607
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    ||||| |||||||| |||||||||||| | |||||||||||||||||||    
T  45186559 gtgagcatgagagagaaagttgtcacaaaaattgttagaaaatggttgt 45186607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 45693810 - 45693754
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatat 69  Q
    |||| ||||||||||||||||||||| || ||||| | |||||||||||||| ||||    
T  45693810 gtgactatgagagataaagttgtcacctaaattgtcacaaaatggttgtcaagatat 45693754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 29030817 - 29030870
Alignment:
Q  16 agtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatat 69  Q
    ||||||||||||||||||||||| ||| |||| | |||||| ||||||| ||||    
T  29030817 agtatgagagataaagttgtcacctaggttgtcacaaaatgattgtcaaaatat 29030870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 33796329 - 33796288
Alignment:
Q  14 tgagtatgagagataaagttgtcacatagattgttagaaaat 55  Q
    ||||||||||||| |||||||||||| | |||||||||||||    
T  33796329 tgagtatgagagagaaagttgtcacaaaaattgttagaaaat 33796288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 26452730 - 26452778
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||| ||| |  ||||||||||||||||||    
T  26452730 gtgagtatgagagagaaagttgtaacaaaagttgttagaaaatggttgt 26452778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 29573363 - 29573411
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| |  |||||| |||||||||||    
T  29573363 gtgagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgt 29573411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 549
Target Start/End: Complemental strand, 44021882 - 44021826
Alignment:
Q  493 ttcatgataaagcctttaaagagcaagagaaaaagatgaagaaaaagataaaacttt 549  Q
    |||| |||||| |||| ||||| |||||  |||||||||||||||||| ||||||||    
T  44021882 ttcaagataaacccttcaaagatcaagaataaaagatgaagaaaaagagaaaacttt 44021826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 6922 - 6866
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatat 69  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  6922 gtgagtatgagagataaagttgtcacatagattgtcacaaaatggttgtcaaaatat 6866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 45815263 - 45815330
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctcttt 80  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||||||| |||| | ||||||||    
T  45815263 gtgagtatgagagataaagttgtcacatatattgtcacaaaatggttgtcaaaatatcatttctcttt 45815330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 33776423 - 33776365
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatatta 71  Q
    ||||||||||||||||||||||||| |||| |||| | |||||||||||||| ||||||    
T  33776423 gtgagtatgagagataaagttgtcatataggttgtcacaaaatggttgtcaaaatatta 33776365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 17945131 - 17945067
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctct 78  Q
    |||||||||||||||||||||||||||||| |||| | |||||||||||||| |||| | ||||||    
T  17945131 gtgagtatgagagataaagttgtcacatag-ttgtcacaaaatggttgtcaaaatatcatttctct 17945067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 8956026 - 8955971
Alignment:
Q  90 gggggccaaaatcgccacactttaaaatttagagggtcaaaagtgggtttaagcca 145  Q
    ||||||||||||||| ||  ||| |||||||| |||||||||||||||||||||||    
T  8956026 gggggccaaaatcgctacttttttaaatttagggggtcaaaagtgggtttaagcca 8955971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 35600735 - 35600669
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctctt 79  Q
    |||||||||| ||||||| ||||||||||| |||| | |||||||||||||| |||| | |||||||    
T  35600735 gtgagtatgaaagataaaattgtcacataggttgtcacaaaatggttgtcaaaatatcatttctctt 35600669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 36703879 - 36703944
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctct 78  Q
    |||||||||||||||||| ||||||||||  |||| | |||||||||||||| |||| | ||||||    
T  36703879 gtgagtatgagagataaaattgtcacatatgttgtcacaaaatggttgtcaaaatatcatttctct 36703944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 6269430 - 6269382
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| | ||||||| |||||||||||    
T  6269430 gtgagtatgagagagaaagttgtcacaaaaattgttataaaatggttgt 6269382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 33212105 - 33212058
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||||    
T  33212105 gtgagtatgagagataaagttgtca-aaaaattgttagaaaatggttgt 33212058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 42584866 - 42584818
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| |  ||||||||||||||||||    
T  42584866 gtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgt 42584818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 46829543 - 46829495
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| | ||||||| |||||||||||    
T  46829543 gtgagtatgagagagaaagttgtcacaaaaattgttacaaaatggttgt 46829495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 44496810 - 44496852
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaat 55  Q
    |||||||||||||| |||||||||||| | |||||||||||||    
T  44496810 gtgagtatgagagagaaagttgtcacaaaaattgttagaaaat 44496852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 19880313 - 19880342
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatag 42  Q
    ||||||||||||||||||||||||||||||    
T  19880313 gtgagtatgagagataaagttgtcacatag 19880342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 41430159 - 41430208
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtc 62  Q
    |||||||| ||||| |||||||||||| |  |||||||||||||||||||    
T  41430159 gtgagtataagagagaaagttgtcacaaaagttgttagaaaatggttgtc 41430208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 1471298 - 1471346
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| |  |||||| |||||||||||    
T  1471298 gtgagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgt 1471346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 2756937 - 2756984
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    ||||||||||||||||||||||||| | || |||||||||| |||||||    
T  2756937 gtgagtatgagagataaagttgtcaaaaag-ttgttagaaattggttgt 2756984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 5174559 - 5174607
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||| ||||| |||||||||||| | ||||||| |||||||||||    
T  5174559 gtgagtataagagagaaagttgtcacaaaaattgttataaaatggttgt 5174607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 34108862 - 34108910
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| ||| |||||||| |  ||||||||||||||||||    
T  34108862 gtgagtatgagagagaaaattgtcacaaaagttgttagaaaatggttgt 34108910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 332 - 430
Target Start/End: Original strand, 4820568 - 4820668
Alignment:
Q  332 ttcactctcctccatctctctc--ccaccacttgcaggcaacctcacaatctggaattcatgttgctttaccacactcctcaccctca-tcagcctccat 428  Q
    ||||||||||||||||||||||  |||||  ||| |  ||| ||||||||||| ||||  |||||||||||||||||||||||||||| ||| |||||||    
T  4820568 ttcactctcctccatctctctcacccacctgttgaac-caatctcacaatctgaaatttctgttgctttaccacactcctcaccctcattcaacctccat 4820666  T
Q  429 ga 430  Q
    ||    
T  4820667 ga 4820668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 6758798 - 6758846
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||| ||||| |||||||||||| | |||||||||||||||||||    
T  6758798 gtgagtataagagagaaagttgtcacaaaaattgttagaaaatggttgt 6758846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 22098319 - 22098271
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| |  ||||||||||||||||||    
T  22098319 gtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgt 22098271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 6940157 - 6940205
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| | ||| ||| |||||||||||    
T  6940157 gtgagtatgagagagaaagttgtcacaaaaattattataaaatggttgt 6940205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 9742387 - 9742443
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatat 69  Q
    ||||||||||||||| ||||||||| |||  |||| | |||||||||||||| ||||    
T  9742387 gtgagtatgagagatgaagttgtcagataacttgtcacaaaatggttgtcaaaatat 9742443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 18695382 - 18695334
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| |  |||||| |||||||||||    
T  18695382 gtgagtatgagagagaaagttgtcacaaaagttgttacaaaatggttgt 18695334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 29807010 - 29807057
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||| | ||||||||| |||||||||||    
T  29807010 gtgagtatgagagagaaagttgtca-aaagattgttaaaaaatggttgt 29807057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 38293366 - 38293414
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||| ||| |||||||||||| | ||||||| |||||||||||    
T  38293366 gtgagtatgatagagaaagttgtcacaaaaattgttataaaatggttgt 38293414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 43560268 - 43560203
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctct 78  Q
    |||||||||||||||||||||||||| |||||||| | ||||||||||| || |||| | ||||||    
T  43560268 gtgagtatgagagataaagttgtcacctagattgtcacaaaatggttgtgaaaatatcatttctct 43560203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 49660243 - 49660178
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctct 78  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||| || |||| | ||||||    
T  49660243 gtgagtatgagagataaagttgtcacataggttgtcacaaaatggttgttaaaatatcatttctct 49660178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 37516588 - 37516522
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctctt 79  Q
    |||||||||||||||||| |||||| ||| ||||||| |||||| ||||||| |||| | |||||||    
T  37516588 gtgagtatgagagataaaattgtcatataaattgttacaaaatgattgtcaaaatatcatttctctt 37516522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 42384029 - 42383979
Alignment:
Q  403 cactcctcaccctcat-cagcctccatgaatagtgattcaaatggtatgac 452  Q
    |||||||||||||||| || ||||||||| |||||||||||||||||||||    
T  42384029 cactcctcaccctcattcaacctccatgagtagtgattcaaatggtatgac 42383979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 39712442 - 39712386
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatat 69  Q
    |||| |||||| ||||||||||||||||||||| | | |||||||||||||| ||||    
T  39712442 gtgaatatgagcgataaagttgtcacatagattatcacaaaatggttgtcaaaatat 39712386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 42384086 - 42384028
Alignment:
Q  332 ttcactctcctccatctctctc--ccaccacttgcaggcaacctcacaatctggaattca 389  Q
    |||||||| |||||||||||||  ||||||||||||| ||| ||||||||||||||||||    
T  42384086 ttcactcttctccatctctctcacccaccacttgcag-caatctcacaatctggaattca 42384028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 550
Target Start/End: Complemental strand, 36386255 - 36386150
Alignment:
Q  439 tcaaatggtatgactcaacacggtgaataaactcttaaaacttggtttacgacattcatgataaagcctttaaagag--caagag-aaaaagatgaagaa 535  Q
    ||||||||||||||||||||| |||| ||||| |||  |||||||||         |||  ||||||||||||||||  |||||| |||||||||||| |    
T  36386255 tcaaatggtatgactcaacacagtgactaaacccttggaacttggtt---------cattgtaaagcctttaaagagagcaagagcaaaaagatgaagga 36386165  T
Q  536 aaagataaaacttta 550  Q
    |||||||||||||||    
T  36386164 aaagataaaacttta 36386150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 46758432 - 46758399
Alignment:
Q  14 tgagtatgagagataaagttgtcacatagattgt 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  46758432 tgagtatgagagataaaattgtcacatagattgt 46758399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 1689455 - 1689407
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| | ||||||| ||||| |||||    
T  1689455 gtgagtatgagagagaaagttgtcacaaaaattgttataaaatagttgt 1689407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 30536055 - 30536007
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| | ||||||| |||||| ||||    
T  30536055 gtgagtatgagagagaaagttgtcacaaaaattgttaaaaaatgattgt 30536007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 52437558 - 52437510
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| | ||| ||| |||||||||||    
T  52437558 gtgagtatgagagagaaagttgtcacaaaaattattaaaaaatggttgt 52437510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 39692359 - 39692303
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatat 69  Q
    |||| ||||||||||||||||||||||||| |||| | |||||||||||||| ||||    
T  39692359 gtgattatgagagataaagttgtcacataggttgtcacaaaatggttgtcaaaatat 39692303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 25830253 - 25830301
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| |  ||||||||||||||||||    
T  25830253 gtgagtatgagagagaaagttgtcacaaaagttgttagaaaatggttgt 25830301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 516
Target Start/End: Complemental strand, 4336190 - 4336151
Alignment:
Q  477 aacttggtttacgacattcatgataaagcctttaaagagc 516  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  4336190 aacttggtttaggacattcatgataaagcctttcaagagc 4336151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 43285970 - 43286037
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctcttt 80  Q
    |||||||||||||| |||||||||||| |  || |||||||||||||||| | |||| | ||||||||    
T  43285970 gtgagtatgagagagaaagttgtcacaaaagttattagaaaatggttgtccaaatatcatttctcttt 43286037  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 16808644 - 16808579
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatattaattctctt 79  Q
    |||||||||||| | |||||||||| | || ||||||||||||||||||| | |||| |||||||||    
T  16808644 gtgagtatgagatagaaagttgtcaaaaag-ttgttagaaaatggttgtccaaatatcaattctctt 16808579  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 67172 - 67216
Alignment:
Q  17 gtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||| |||||||||||| |  ||||||||||||||||||    
T  67172 gtatgagagagaaagttgtcacaaaagttgttagaaaatggttgt 67216  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 25987794 - 25987842
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    ||||||||||||||||||||||||||| |  |||| | |||||||||||    
T  25987794 gtgagtatgagagataaagttgtcacaaaagttgtaaaaaaatggttgt 25987842  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 33100476 - 33100524
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||||| |  |||||| |||||||||||    
T  33100476 gtgagtatgagagagaaagttgtcacaaaagttgttataaaatggttgt 33100524  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 35819000 - 35818953
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||||||||| |||||||||| | | |||||||||||||||||||    
T  35819000 gtgagtatgagagagaaagttgtca-aaaaattgttagaaaatggttgt 35818953  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 42786667 - 42786715
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||| ||||| |||||||||||| | ||||| |||||||||||||    
T  42786667 gtgagtataagagagaaagttgtcacaaaaattgtaagaaaatggttgt 42786715  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 10335614 - 10335558
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgtcaacatat 69  Q
    |||||||||||||||||||||||||||||  | || | |||||||||||||| ||||    
T  10335614 gtgagtatgagagataaagttgtcacataagtcgtcacaaaatggttgtcaaaatat 10335558  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 28975341 - 28975381
Alignment:
Q  212 gtggggtttagcatgggaaa--agagttgtttcctatcatg 250  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  28975341 gtggggtttagcatgggaaaggagagttgtttcctatcatg 28975381  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 1376428 - 1376380
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||| ||||| |||||||||||| |  ||||||||||||||||||    
T  1376428 gtgagtataagagagaaagttgtcacaaaagttgttagaaaatggttgt 1376380  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 1384176 - 1384128
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    |||||||| ||||| |||||||||||| |  ||||||||||||||||||    
T  1384176 gtgagtataagagagaaagttgtcacaaaagttgttagaaaatggttgt 1384128  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 12560 - 12515
Alignment:
Q  14 tgagtatgagagataaagttgtcacatagattgttagaaaatggtt 59  Q
    ||||||| ||||| |||||||||||| | |||||||||||||||||    
T  12560 tgagtataagagagaaagttgtcacaaaaattgttagaaaatggtt 12515  T

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Target: scaffold0432 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 6527 - 6575
Alignment:
Q  13 gtgagtatgagagataaagttgtcacatagattgttagaaaatggttgt 61  Q
    ||||||||||||||||||||||||||| |  |||||| |||||| ||||    
T  6527 gtgagtatgagagataaagttgtcacaaaagttgttaaaaaatgattgt 6575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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