View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11587_low_5 (Length: 481)
Name: NF11587_low_5
Description: NF11587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11587_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 417
Target Start/End: Original strand, 37354207 - 37354606
Alignment:
| Q |
10 |
gagcacagaaaaaggcagagcagcaacaagagaatgctgagcagcgacagaatgctgaggaaatgaagaatggcaaaaagagtgaagcataggaagag-- |
107 |
Q |
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| T |
37354207 |
gagcacagaaaaaggcagagcagcaacaagagaatgctgagcagcgacagaatgctgaggaaatgaagaatagcaaaaagagtgaagcataggaagagag |
37354306 |
T |
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| Q |
108 |
tgcatgaaaatgttatcatttgaatgagaagtaggctttatctgtttgcttttagcaaatcctataaatgtcatattgaattctttttgaagtcttctgt |
207 |
Q |
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| T |
37354307 |
tgcatgaaaatgttatcatttgaatgcgaagtaggctttatctgtttgcttttagcaaatcctataaatgtcatattgaattctt-----------ctgt |
37354395 |
T |
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| Q |
208 |
tttaaggtctcctagtaagagcattgttaagaagaaattgtgtttattaaacaatcttgcatctttttgtgataacgcttgagttcaagttcgaaccaga |
307 |
Q |
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| T |
37354396 |
tttaaggtctcctagtaagagcattgttaagaagaaattgtgtttattaaacaatcttgcatctttttgtgataacgcttgagttcaagttcgaaccaga |
37354495 |
T |
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| Q |
308 |
ctaccattttggcattctaaaggtacatttggcatcaataaaaatagtccaaaaatattctcatgagcatgac-nnnnnnntgtccaaaagtgacataca |
406 |
Q |
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| T |
37354496 |
ctaccattttggcattctaaaggtacatttggcatcaataaaaatagtccaaaaatattctcatgagcatgacaaaaaaaatgtccaaaagtgacataca |
37354595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 37354782 - 37354832
Alignment:
| Q |
422 |
tgaaataatatacagcttgaaaattgaaatacttatctaccttatgatgtc |
472 |
Q |
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| T |
37354782 |
tgaaataatatacagcttgaaaattgaaatacttatctaccttatgatgtc |
37354832 |
T |
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