View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11588_high_1 (Length: 571)
Name: NF11588_high_1
Description: NF11588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11588_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 43010778 - 43011037
Alignment:
| Q |
18 |
actcttaatggtgaggtgctaattagtttatgggctatggtggggatgaaaacgttggcgagatttagatcctctcatgtttgagataatgggagaggct |
117 |
Q |
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| T |
43010778 |
actcttaatggtgaggtgctaattagtttatgggctatggtggggatgaaaacgttggcgagatttagatcctatcatgtttgagataatgggagaggct |
43010877 |
T |
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| Q |
118 |
tatctcaccatcaaaattcaatgaattctacaactttaagtatagtcatgcgaaatctaatgaatttagttggtaaaatcatcaacataactcttccaag |
217 |
Q |
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| T |
43010878 |
tatctcaccatcaaaattcaatgatttctacaactttaagtatagtcatgcgaaatctaatgaatttagttggtaaaatcatcaacataactcttccaag |
43010977 |
T |
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| Q |
218 |
ttccaacgatttcaaacatgaaaggattcaaatccgttatgaagatcttggcatgtgact |
277 |
Q |
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| T |
43010978 |
ttccaacgatttcaaacatgaaaggattcaaatccgttatgaagatcttggcatgtgact |
43011037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 430 - 561
Target Start/End: Original strand, 43011042 - 43011175
Alignment:
| Q |
430 |
gagagtgctccctttttataataccatagtgtgtatttttcttgcactgttttattctctcaattgtcattttatgcaaccg-ttcttttctgctccctt |
528 |
Q |
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| T |
43011042 |
gagagtgctccctttttataataccatagtgtgtatttttcttgcactgttttattctctaacttgtcattttatgcaaccgtttcttttctgctccctt |
43011141 |
T |
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| Q |
529 |
taatttg-ttttttgttttgttcactgtcctttg |
561 |
Q |
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| T |
43011142 |
taatttgtttttttgttttgttgactgtcctttg |
43011175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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