View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11588_high_4 (Length: 379)
Name: NF11588_high_4
Description: NF11588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11588_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 96 - 377
Target Start/End: Original strand, 6410485 - 6410766
Alignment:
| Q |
96 |
gttaaatgcttggtgattttcattctttgatagttactcgtttcttgttttgatacaaatatattcaatgttattctgtcaaattcctgatgacactcaa |
195 |
Q |
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| T |
6410485 |
gttaaatgcttggtgattttcattctttgatagttactcgtttcttgttttgatacaaatatattcaatgttattctgtcaaattcctgatgacactcaa |
6410584 |
T |
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| Q |
196 |
atgcgtctccaaaccctggaattcacttatttcctgagatcgcaagttccgcagaaaacacacaccttctcagctcaagaatgaaccccaaactcattct |
295 |
Q |
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| T |
6410585 |
atgcgtctccaaaccctggaattgacttatttcctgagatcgcaagttccgcagaaaacacacaccttctcagctcaagaatgaaccccaaactcattct |
6410684 |
T |
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| Q |
296 |
aaccgacagatgcataccagattatcctctcggtttattcttcactaatgagaatggttgcctcttgcaatggtatcctttg |
377 |
Q |
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| T |
6410685 |
aaccgacagatgcataccagattatcctctcggtttattcttcacttatgagaatggttgcctcttgcgatggtatcctttg |
6410766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 6402622 - 6402502
Alignment:
| Q |
173 |
gtcaaattcctgatgacactcaaatgcgtctccaaaccctggaattcacttatttcctgagatcgcaagttccgcagaaaacacacaccttctcagctca |
272 |
Q |
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|||||||||||||||||||||||||| |||| |||| | ||||||||||| ||||||| || |||||||| ||||||| |||||||| ||||||| |
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| T |
6402622 |
gtcaaattcctgatgacactcaaatgtgtctgcaaatcatggaattcactaatttcctccgaaagcaagttcggcagaaa----acaccttcgcagctca |
6402527 |
T |
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| Q |
273 |
agaatgaaccccaaactcattctaa |
297 |
Q |
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| T |
6402526 |
agaatgaaccccaaactcattctaa |
6402502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 6413268 - 6413348
Alignment:
| Q |
96 |
gttaaatgcttggtgattttcattcttt-gatagttactcgtttcttgttttgatacaaatatattcaatgttattctgtc |
175 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||| |||| |
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| T |
6413268 |
gttaaatgcttggtgattttcattcttttgatagttactggtttcatgttttgatacaagtatattcaatgttattttgtc |
6413348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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