View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11588_high_8 (Length: 253)
Name: NF11588_high_8
Description: NF11588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11588_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26936512 - 26936277
Alignment:
| Q |
1 |
gcacatttacaatcctgtaagcataaattcgaacatgcttcgcggctaatattaacaatttcaggaacacctttgagcacactacctacattatcaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26936512 |
gcacatttacaatcctgtaagcataaattcgaacacgcttctcggctaatattaacaatttcaggaacacctttgagcacactacctacattatcaattt |
26936413 |
T |
|
| Q |
101 |
tcaacatttccgcctttttgccgttgcaaaaaccaccggaaaatccttcactacaatccgcactactcttttcgtcatttgtcaaaatctgaatacacga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26936412 |
tcaacatttccgcctttttgccgttgcaaaaaccaccggaaaatccttcactacaatccgcactactcttttcatcatttgtcaaaatctgaatacacga |
26936313 |
T |
|
| Q |
201 |
acaggtattggaaaatgtacatataccataaggtct |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26936312 |
acaggtattggaaaatgtacatataccataaggtct |
26936277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University