View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11588_high_9 (Length: 222)

Name: NF11588_high_9
Description: NF11588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11588_high_9
NF11588_high_9
[»] chr3 (18 HSPs)
chr3 (15-222)||(30989900-30990107)
chr3 (15-222)||(22186652-22186859)
chr3 (15-222)||(21945288-21945495)
chr3 (15-222)||(22034181-22034388)
chr3 (15-222)||(22052398-22052604)
chr3 (15-189)||(22010486-22010660)
chr3 (15-222)||(22104375-22104594)
chr3 (15-222)||(22179069-22179288)
chr3 (15-219)||(21936805-21937021)
chr3 (17-222)||(18967580-18967785)
chr3 (138-222)||(22114872-22114956)
chr3 (15-222)||(22621515-22621734)
chr3 (15-81)||(22657820-22657886)
chr3 (15-108)||(22114044-22114137)
chr3 (164-222)||(22615842-22615900)
chr3 (15-129)||(22648864-22648979)
chr3 (154-212)||(5412733-5412791)
chr3 (164-221)||(22657668-22657725)
[»] chr1 (3 HSPs)
chr1 (15-221)||(34979821-34980039)
chr1 (15-80)||(34975163-34975228)
chr1 (15-221)||(34988878-34989096)
[»] chr7 (2 HSPs)
chr7 (31-222)||(873157-873348)
chr7 (31-222)||(1234434-1234625)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 30990107 - 30989900
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30990107 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 30990008  T
Q  115 ttactccacaagattaaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaa 214  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30990007 ttactccacaagattaaaactgtgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaa 30989908  T
Q  215 gatatggc 222  Q
    ||||||||    
T  30989907 gatatggc 30989900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22186652 - 22186859
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    |||||||||  |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||  ||||||| ||||  |||||||||||| || ||    
T  22186652 ggtgaagcaacttagggaagcagcttttcacatagaagatatcattgatgattatttgatccaggtacgacaacaacctcgagatcctggatgtatagct 22186751  T
Q  115 ttactccacaagattaaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaa 214  Q
    ||||| || ||| | |||||| || | |||||||||||||||||||||| |||||||||  ||||||| ||||||  ||||||||  |||||||||||||    
T  22186752 ttacttcataagctcaaaactacgttacctcgtcgtcgaatagcatctgtgattcaagatgttaagtcatctgttattgagatcacagaaagaagtgaaa 22186851  T
Q  215 gatatggc 222  Q
    ||||||||    
T  22186852 gatatggc 22186859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 21945288 - 21945495
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    |||||||||  ||||||  |||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||  ||||   ||||||||||| || ||    
T  21945288 ggtgaagcaacttagggtggcagcttttcgcatagaagatatcattgatgattatttgatccaggtaggacaacgacctcgctatcctggatgtatagct 21945387  T
Q  115 ttactccacaagattaaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaa 214  Q
    ||||| |  ||| | ||||||  ||||||||||||||||||||||||||||||||||||  ||||||| | |||||||| ||||||||||||||||| ||    
T  21945388 ttacttcttaagctcaaaactatgatccctcgtcgtcgaatagcatctgagattcaagatgttaagtcatatgttcgtgggatcaaggaaagaagtggaa 21945487  T
Q  215 gatatggc 222  Q
     |||||||    
T  21945488 catatggc 21945495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22034181 - 22034388
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    |||||||||  ||||||| |||||||||||||||||||||||||| |||||||||||||||||  |  |||| || ||||  |||||||||||| ||  |    
T  22034181 ggtgaagcaacttagggaggcagcttttcgcatagaagatatcattgatgattatttgatccagttaggacagcaacctcgagatcctggatgtatagat 22034280  T
Q  115 ttactccacaagattaaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaa 214  Q
    ||||| || ||| | ||||||  |||||||||||||||||||||||||||||| |||||  ||||| | |||||||||| |||||  |||||||||||||    
T  22034281 ttacttcataagctcaaaactatgatccctcgtcgtcgaatagcatctgagatacaagatgttaagacatctgttcgtgggatcacagaaagaagtgaaa 22034380  T
Q  215 gatatggc 222  Q
    ||||||||    
T  22034381 gatatggc 22034388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22052398 - 22052604
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    |||||||||  ||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||  ||||||| ||||   ||||||||||| || ||    
T  22052398 ggtgaagcaacttagggaggcagcttttcgcatagaagatatcattgatgattatttgatccaggtaggacaacaacctcgctatcctggatgtatagct 22052497  T
Q  115 ttactccacaagattaaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaa 214  Q
    ||||| || ||| | ||||||  || |||||||||||||||||||||| ||||||||||  ||||| | ||||||| || |||||  |||||||||||||    
T  22052498 ttacttcataagctcaaaactatga-ccctcgtcgtcgaatagcatctaagattcaagatcttaagacatctgttcatgggatcacagaaagaagtgaaa 22052596  T
Q  215 gatatggc 222  Q
    ||||||||    
T  22052597 gatatggc 22052604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 22010486 - 22010660
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    |||||||||  |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||  ||||||| |||   |||||||||||| || ||    
T  22010486 ggtgaagcaacttagggaagcagcttttcacatagaagatatcattgatgattatttgatccaggtacgacaacaaccttgagatcctggatgtatagct 22010585  T
Q  115 ttactccacaagattaaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgtt 189  Q
    ||||| || ||| | ||||||  ||| ||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  22010586 ttacttcataagctcaaaactatgatacctcgtcgtcgaatagcatctgagattcaagatgttaagtcatctgtt 22010660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22104375 - 22104594
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    |||||||||  |||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||  |||| || |||| |||||||||||||||| ||    
T  22104375 ggtgaagcaacttagggtagcagcttttcgcatagaagatatcattgatgagtatatgatccatgtaggacagcagcctcgtgatcctggatgtgtagct 22104474  T
Q  115 ttactccacaagatt------------aaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaagg 202  Q
     ||||  | ||||||            ||||||  || |||||| | |||||||||| |||||||||||||  ||||||| |||||||||| ||||||||    
T  22104475 atacttgataagattgctcacttactcaaaactatgacccctcgccatcgaatagcagctgagattcaagatgttaagtcatctgttcgtgggatcaagg 22104574  T
Q  203 aaagaagtgaaagatatggc 222  Q
    ||||||||||| ||||||||    
T  22104575 aaagaagtgaacgatatggc 22104594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 22179069 - 22179288
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    |||||||||  |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||| |||||||||||||||| ||    
T  22179069 ggtgaagcaacttagggtagcagcttttcgcatagaagatatcattgatgattatttgatccatgttggacaacaacctcgtgatcctggatgtgtagct 22179168  T
Q  115 ttactccacaagatt------------aaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaagg 202  Q
     || |  | ||||||            |||||   || || ||| | |||||||||| |||||||||||||||||||||| |||||||||  ||||||||    
T  22179169 gtatttgataagattactcacttactcaaaaccatgacccgtcgccatcgaatagcagctgagattcaagacattaagtcatctgttcgtaggatcaagg 22179268  T
Q  203 aaagaagtgaaagatatggc 222  Q
    |||||||||| | |||||||    
T  22179269 aaagaagtgataaatatggc 22179288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 21936805 - 21937021
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    |||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||  ||||  | ||||||| || |||||||||| ||    
T  21936805 ggtgaagcagcttagggaagcagctttttgcatagaagatatcattgatgaatatatgatccatgtaggacagaagcctcatggtcatggatgtgtagct 21936904  T
Q  115 ttactccacaagatt------------aaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaagg 202  Q
    ||||| || || |||            | |||   || | |||| | |||||||||| |||||||||||||||||||||| |||||||||| ||||||||    
T  21936905 ttacttcataatatttctcacttactcagaaccatgacctctcgccatcgaatagcagctgagattcaagacattaagtcatctgttcgtgggatcaagg 21937004  T
Q  203 aaagaagtgaaagatat 219  Q
    |||||||||| ||||||    
T  21937005 aaagaagtgatagatat 21937021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 18967785 - 18967580
Alignment:
Q  17 tgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatcttt 116  Q
    |||||||||||||| ||||| |||||||||||||| | ||| | ||||||||| ||||||||||  | || || |||  |||||||||||||||| ||||    
T  18967785 tgaagcaggttaggaaagcatcttttcgcatagaaaacatcgttgatgattatgtgatccatgtaggccagcagccttgtgatcctggatgtgtaccttt 18967686  T
Q  117 actccacaagattaaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaaga 216  Q
     ||| | ||| | ||||||  || || ||| | || |||||||| |||||||| |||||||||||| | |||| ||  |||||||||||||||||| | |    
T  18967685 cctctataagctcaaaactttgacccttcgccatcaaatagcatatgagattcgagacattaagtcatatgtttgtcggatcaaggaaagaagtgacaaa 18967586  T
Q  217 tatggc 222  Q
    ||||||    
T  18967585 tatggc 18967580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 22114872 - 22114956
Alignment:
Q  138 gatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaagatatggc 222  Q
    |||||||||||||||||||||||||||||| |||||  ||||| | |||||||||| |||||  |||||||||||||||||||||    
T  22114872 gatccctcgtcgtcgaatagcatctgagatacaagattttaagacatctgttcgtgggatcacagaaagaagtgaaagatatggc 22114956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 22621734 - 22621515
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    |||||| || ||||| ||| || | |||||||||||||| ||||| ||||||||| ||||||||||||||||||| |||| | ||| ||| ||| |  ||    
T  22621734 ggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacagcctcgtaatcttgggtgtatggct 22621635  T
Q  115 ttactccacaagatta------------aaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaagg 202  Q
    |||||||| || ||||            |||||  ||||||||| | ||||||||| ||  ||||||||| ||||||||| ||||| | || ||||||||    
T  22621634 ttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaagg 22621535  T
Q  203 aaagaagtgaaagatatggc 222  Q
    ||||||||||||| ||||||    
T  22621534 aaagaagtgaaaggtatggc 22621515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 22657886 - 22657820
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtg 81  Q
    |||||||||||||||||||  ||||||||||||||||||| |||| ||||||||| |||||||||||    
T  22657886 ggtgaagcaggttagggaaatagcttttcgcatagaagatgtcattgatgattatatgatccatgtg 22657820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 22114044 - 22114137
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgt 108  Q
    |||||||||  ||||||| |||||||||| ||||||||||||||| ||||||||||||||||| ||  |||| || ||||  ||||||||||||    
T  22114044 ggtgaagcaacttagggaggcagcttttcacatagaagatatcattgatgattatttgatccaggtaggacagcaacctcgagatcctggatgt 22114137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 22615900 - 22615842
Alignment:
Q  164 agattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaagatatggc 222  Q
    ||||||||||  |||||||||||||| ||  ||||||||||||||||||||||||||||    
T  22615900 agattcaagaagttaagtcgtctgtttgtatgatcaaggaaagaagtgaaagatatggc 22615842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 22648979 - 22648864
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatag-aagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatc 113  Q
    |||||||||  |||| ||||||||||| ||||||| |||||||||| ||||||||| ||||| || ||  ||| || |||| |||||  |||||| || |    
T  22648979 ggtgaagcaacttagagaagcagctttccgcatagaaagatatcattgatgattatatgatctatatggaacagcagcctcgtgatctcggatgtctagc 22648880  T
Q  114 tttactccacaagatt 129  Q
    ||||||||| ||||||    
T  22648879 tttactccataagatt 22648864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 5412733 - 5412791
Alignment:
Q  154 atagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtga 212  Q
    ||||||||||||||||| |||||||||| |||  ||||||  |||||||||||||||||    
T  5412733 atagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagtga 5412791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 22657725 - 22657668
Alignment:
Q  164 agattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaagatatgg 221  Q
    |||||||||| |||||||| | |||| ||| |||||| ||||||||||||||||||||    
T  22657725 agattcaagagattaagtcatttgtttgtgggatcaaagaaagaagtgaaagatatgg 22657668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 34979821 - 34980039
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    |||||||||||||| ||||| ||||||||| ||||||||| |||| ||||||||| ||||||||||  | || || |||| ||||||||||||  |||||    
T  34979821 ggtgaagcaggttacggaagtagcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaacctcgtgatcctggatgcatatct 34979920  T
Q  115 ttactccacaagatt------------aaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaagg 202  Q
     ||||| | ||||||            ||||||  ||  |||| ||||| |||||||||||||||||||||||| |||||   |||| ||| |||||| |    
T  34979921 ctactcaataagattcctcacttgctcaaaactatgactcctcttcgtcaaatagcatctgagattcaagacatcaagtcagttgtttgtgggatcaaag 34980020  T
Q  203 aaagaagtgaaagatatgg 221  Q
    |||||||||||||||||||    
T  34980021 aaagaagtgaaagatatgg 34980039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 34975163 - 34975228
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgt 80  Q
    ||||||||||||||||||||  ||||||| |||||||||| |||| ||||||||| ||||||||||    
T  34975163 ggtgaagcaggttagggaagtggcttttctcatagaagatgtcattgatgattatatgatccatgt 34975228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 34988878 - 34989096
Alignment:
Q  15 ggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatct 114  Q
    ||||||||||||||||||||  |||||||| ||||||||| |||| ||||||||| ||||||||||  | || || |||  ||||||||||||  |||||    
T  34988878 ggtgaagcaggttagggaagtggcttttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaaccttgtgatcctggatgcatatct 34988977  T
Q  115 ttactccacaagatt------------aaaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaagg 202  Q
      |||||| ||| ||            ||||||  ||  ||||| |||| |||||| ||||||||||||||||| |||||   |||| |||  ||||| |    
T  34988978 ccactccataaggttgctcgttttcccaaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaag 34989077  T
Q  203 aaagaagtgaaagatatgg 221  Q
    |||||||||||||||||||    
T  34989078 aaagaagtgaaagatatgg 34989096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 873348 - 873157
Alignment:
Q  31 gaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatctttactccacaagatta 130  Q
    ||||||||||| || |||||| ||||| | ||||| |||||||| || ||| ||||  | ||||| |||| |||||||||| | |||| ||| ||| | |    
T  873348 gaagcagctttgcgtatagaaaatatcgttgatgactatttgattcaggtgggacagaagcctcaggatcatggatgtgtagcgttaccccataagctca 873249  T
Q  131 aaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaagatatggc 222  Q
    |||||  || |||||| |||||||||   | ||||||||| ||||||||||| | ||||| |  ||| ||||||||||||||||||||||||    
T  873248 aaactatgaaccctcgccgtcgaataatgtatgagattcaggacattaagtcatatgttctttggattaaggaaagaagtgaaagatatggc 873157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 1234625 - 1234434
Alignment:
Q  31 gaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatcctggatgtgtatctttactccacaagatta 130  Q
    ||||||||||| || |||||| ||||| | ||||| |||||||| || ||| ||||  | ||||| |||| |||||||||| | |||| ||| ||| | |    
T  1234625 gaagcagctttgcgtatagaaaatatcgttgatgactatttgattcaggtgggacagaagcctcaggatcatggatgtgtagcgttaccccataagctca 1234526  T
Q  131 aaactgcgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgttcgtgagatcaaggaaagaagtgaaagatatggc 222  Q
    |||||  || |||||| |||||||||   | ||||||||| ||||||||||| | ||||| |  ||| ||||||||||||||||||||||||    
T  1234525 aaactatgaaccctcgccgtcgaataatgtatgagattcaggacattaagtcatatgttctttggattaaggaaagaagtgaaagatatggc 1234434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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