View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11588_low_7 (Length: 292)
Name: NF11588_low_7
Description: NF11588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11588_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 5461220 - 5461181
Alignment:
| Q |
81 |
taataatttggaataataaattaattgaatgtaatcacat |
120 |
Q |
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| T |
5461220 |
taataatttgagataataaattaattgaatgtaatcacat |
5461181 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 14782826 - 14782794
Alignment:
| Q |
135 |
gctttcaatcagaagtgtcggtgctacagagat |
167 |
Q |
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| T |
14782826 |
gctttccatcagaagtgtcggtgctacagagat |
14782794 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 33598479 - 33598507
Alignment:
| Q |
137 |
tttcaatcagaagtgtcggtgctacagag |
165 |
Q |
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| T |
33598479 |
tttcaatcagaagtgtcggtgctacagag |
33598507 |
T |
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