View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11589_high_1 (Length: 851)

Name: NF11589_high_1
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11589_high_1
NF11589_high_1
[»] chr8 (14 HSPs)
chr8 (17-296)||(25264760-25265038)
chr8 (17-296)||(33294787-33295066)
chr8 (500-713)||(25264343-25264555)
chr8 (531-713)||(25265780-25265961)
chr8 (500-713)||(33293942-33294158)
chr8 (531-713)||(33295321-33295501)
chr8 (348-412)||(25264643-25264707)
chr8 (348-412)||(33295119-33295183)
chr8 (500-592)||(27167128-27167220)
chr8 (547-622)||(45447099-45447174)
chr8 (659-713)||(3158039-3158093)
chr8 (566-643)||(27166837-27166914)
chr8 (553-644)||(39885973-39886064)
chr8 (579-633)||(31917618-31917672)
[»] chr4 (40 HSPs)
chr4 (15-296)||(53355519-53355798)
chr4 (15-296)||(19995414-19995696)
chr4 (17-296)||(55948294-55948575)
chr4 (17-296)||(44252028-44252307)
chr4 (67-293)||(39653603-39653829)
chr4 (500-713)||(19995898-19996110)
chr4 (500-713)||(19994501-19994713)
chr4 (500-713)||(44251608-44251820)
chr4 (500-644)||(53355171-53355315)
chr4 (531-713)||(55948828-55949009)
chr4 (531-713)||(18597635-18597816)
chr4 (531-713)||(44253067-44253248)
chr4 (531-713)||(55947363-55947544)
chr4 (348-412)||(19995745-19995809)
chr4 (348-412)||(44251908-44251972)
chr4 (348-412)||(53355404-53355468)
chr4 (575-713)||(42978838-42978975)
chr4 (575-713)||(48713381-48713518)
chr4 (575-713)||(32082552-32082689)
chr4 (575-713)||(42977201-42977338)
chr4 (575-713)||(54123464-54123601)
chr4 (575-648)||(10338087-10338160)
chr4 (575-713)||(10337107-10337244)
chr4 (575-644)||(54121898-54121967)
chr4 (349-412)||(55948631-55948691)
chr4 (500-587)||(36139714-36139801)
chr4 (659-713)||(18597856-18597910)
chr4 (575-632)||(16880408-16880465)
chr4 (553-622)||(39637362-39637431)
chr4 (352-409)||(39653499-39653556)
chr4 (500-541)||(44253018-44253059)
chr4 (500-537)||(55948779-55948816)
chr4 (575-647)||(16879226-16879298)
chr4 (575-713)||(48711861-48711998)
chr4 (508-540)||(55947553-55947585)
chr4 (578-644)||(3068995-3069061)
chr4 (546-636)||(24039753-24039843)
chr4 (659-713)||(24919055-24919109)
chr4 (659-713)||(38157023-38157077)
chr4 (660-713)||(54534981-54535034)
[»] chr3 (18 HSPs)
chr3 (15-296)||(33733875-33734158)
chr3 (17-296)||(53528398-53528678)
chr3 (500-713)||(53529378-53529590)
chr3 (500-713)||(53527973-53528188)
chr3 (531-713)||(33732968-33733149)
chr3 (546-713)||(33734392-33734558)
chr3 (575-714)||(31656955-31657094)
chr3 (575-713)||(41083189-41083327)
chr3 (575-644)||(31796753-31796822)
chr3 (575-644)||(48568449-48568518)
chr3 (575-644)||(40499171-40499240)
chr3 (348-412)||(33734208-33734272)
chr3 (348-412)||(53528277-53528338)
chr3 (578-713)||(41081805-41081939)
chr3 (578-644)||(31795444-31795510)
chr3 (578-644)||(48567067-48567133)
chr3 (500-540)||(33734361-33734401)
chr3 (500-532)||(33733166-33733198)
[»] chr1 (43 HSPs)
chr1 (15-296)||(33258281-33258561)
chr1 (15-296)||(33278453-33278733)
chr1 (17-296)||(7654621-7654900)
chr1 (17-296)||(19056707-19056986)
chr1 (15-296)||(28920006-28920287)
chr1 (17-296)||(36146278-36146555)
chr1 (500-713)||(33259216-33259428)
chr1 (500-713)||(33279375-33279587)
chr1 (500-704)||(36146756-36146958)
chr1 (73-296)||(24088702-24088927)
chr1 (531-713)||(7655139-7655320)
chr1 (500-713)||(28919086-28919301)
chr1 (531-713)||(16673131-16673312)
chr1 (510-713)||(28920506-28920711)
chr1 (531-713)||(36145347-36145528)
chr1 (500-713)||(33257884-33258080)
chr1 (500-713)||(33278056-33278252)
chr1 (531-713)||(7653689-7653870)
chr1 (531-644)||(19057742-19057855)
chr1 (555-644)||(16672726-16672815)
chr1 (561-626)||(1969636-1969701)
chr1 (500-622)||(33485169-33485291)
chr1 (348-412)||(19056589-19056653)
chr1 (348-412)||(33258167-33258231)
chr1 (348-412)||(33278339-33278403)
chr1 (353-412)||(28920348-28920407)
chr1 (576-711)||(24438867-24439002)
chr1 (577-713)||(41668276-41668411)
chr1 (547-622)||(46605813-46605888)
chr1 (575-713)||(50316969-50317106)
chr1 (348-408)||(36146607-36146664)
chr1 (500-541)||(7655090-7655131)
chr1 (575-644)||(22684069-22684138)
chr1 (500-540)||(7653879-7653919)
chr1 (528-644)||(24085582-24085698)
chr1 (500-540)||(36145537-36145577)
chr1 (369-412)||(7654959-7655002)
chr1 (659-713)||(16592024-16592078)
chr1 (576-644)||(19251082-19251150)
chr1 (500-541)||(19057693-19057734)
chr1 (348-409)||(24088976-24089037)
chr1 (659-713)||(31321012-31321066)
chr1 (574-635)||(50315398-50315459)
[»] chr7 (47 HSPs)
chr7 (17-296)||(31392990-31393268)
chr7 (17-296)||(45276827-45277105)
chr7 (18-296)||(8230954-8231232)
chr7 (19-296)||(32882053-32882329)
chr7 (15-296)||(21715994-21716259)
chr7 (500-713)||(21716463-21716675)
chr7 (17-296)||(40028893-40029155)
chr7 (500-713)||(45276413-45276624)
chr7 (500-713)||(40029873-40030085)
chr7 (508-713)||(8230073-8230277)
chr7 (531-713)||(21715075-21715256)
chr7 (531-713)||(45277842-45278023)
chr7 (531-713)||(8231509-8231690)
chr7 (531-713)||(31393534-31393715)
chr7 (531-713)||(31392061-31392242)
chr7 (531-713)||(40028460-40028641)
chr7 (531-644)||(32881187-32881300)
chr7 (531-701)||(4675672-4675840)
chr7 (531-644)||(32882590-32882703)
chr7 (575-644)||(46245193-46245262)
chr7 (575-644)||(14774583-14774652)
chr7 (575-644)||(15225036-15225105)
chr7 (348-412)||(8231304-8231368)
chr7 (348-412)||(21716311-21716375)
chr7 (348-412)||(32882388-32882452)
chr7 (348-412)||(40028779-40028843)
chr7 (348-412)||(45276713-45276777)
chr7 (348-412)||(31393333-31393397)
chr7 (575-644)||(15135449-15135518)
chr7 (575-644)||(30792749-30792818)
chr7 (578-713)||(46246497-46246631)
chr7 (575-629)||(11747478-11747532)
chr7 (576-684)||(12180559-12180666)
chr7 (500-541)||(31393485-31393526)
chr7 (501-539)||(40028651-40028689)
chr7 (575-644)||(15136859-15136927)
chr7 (576-644)||(9532534-9532602)
chr7 (586-629)||(31734685-31734728)
chr7 (578-632)||(37131918-37131972)
chr7 (574-635)||(11669921-11669982)
chr7 (500-532)||(32882541-32882573)
chr7 (553-644)||(13420183-13420274)
chr7 (500-531)||(21715274-21715305)
chr7 (578-644)||(11671208-11671274)
chr7 (593-631)||(21914413-21914451)
chr7 (591-644)||(11748887-11748940)
chr7 (500-533)||(31392258-31392291)
[»] chr5 (26 HSPs)
chr5 (15-296)||(1417833-1418114)
chr5 (15-296)||(30333368-30333646)
chr5 (17-296)||(25915115-25915398)
chr5 (500-648)||(25914557-25914705)
chr5 (500-713)||(1418780-1418992)
chr5 (500-713)||(30333852-30334063)
chr5 (500-635)||(1417491-1417626)
chr5 (506-713)||(30332286-30332495)
chr5 (531-713)||(25916153-25916334)
chr5 (575-644)||(38624787-38624856)
chr5 (348-412)||(1417716-1417780)
chr5 (578-644)||(17554925-17554991)
chr5 (348-412)||(25914793-25914857)
chr5 (579-644)||(11772623-11772688)
chr5 (578-713)||(36619547-36619682)
chr5 (353-412)||(30333704-30333763)
chr5 (578-713)||(8874196-8874330)
chr5 (575-644)||(39101786-39101855)
chr5 (575-713)||(8872523-8872659)
chr5 (578-644)||(17552041-17552108)
chr5 (578-644)||(38626092-38626158)
chr5 (578-647)||(11771266-11771335)
chr5 (500-541)||(25916104-25916145)
chr5 (575-713)||(39103330-39103467)
chr5 (575-644)||(36621145-36621214)
chr5 (659-713)||(16308568-16308622)
[»] chr2 (30 HSPs)
chr2 (15-296)||(1841106-1841386)
chr2 (500-713)||(13947751-13947962)
chr2 (500-713)||(1841596-1841811)
chr2 (531-713)||(14088940-14089120)
chr2 (531-713)||(1840160-1840341)
chr2 (532-635)||(13948471-13948578)
chr2 (532-635)||(14089678-14089785)
chr2 (575-644)||(45499376-45499445)
chr2 (575-644)||(40303364-40303433)
chr2 (348-408)||(1841442-1841502)
chr2 (348-412)||(13948268-13948332)
chr2 (348-412)||(14089475-14089539)
chr2 (578-713)||(28563379-28563513)
chr2 (251-296)||(13948172-13948217)
chr2 (251-296)||(14089379-14089424)
chr2 (578-713)||(40304684-40304818)
chr2 (578-713)||(45492954-45493088)
chr2 (578-713)||(45500696-45500830)
chr2 (500-541)||(13948421-13948462)
chr2 (500-541)||(14089128-14089169)
chr2 (500-541)||(14089628-14089669)
chr2 (500-538)||(1840352-1840390)
chr2 (575-644)||(16142297-16142366)
chr2 (575-647)||(44095423-44095495)
chr2 (529-644)||(16143469-16143584)
chr2 (168-203)||(13948138-13948173)
chr2 (168-203)||(14089345-14089380)
chr2 (577-644)||(38729983-38730050)
chr2 (594-644)||(38728255-38728305)
chr2 (575-644)||(44097270-44097339)
[»] chr6 (12 HSPs)
chr6 (15-227)||(19083512-19083725)
chr6 (500-644)||(19082737-19082881)
chr6 (500-713)||(19083964-19084176)
chr6 (575-713)||(8745435-8745572)
chr6 (575-713)||(1258358-1258496)
chr6 (576-713)||(8752720-8752856)
chr6 (578-713)||(1256717-1256851)
chr6 (531-636)||(7678518-7678623)
chr6 (575-713)||(2956154-2956291)
chr6 (249-296)||(19083725-19083772)
chr6 (368-412)||(19083831-19083875)
chr6 (659-713)||(7678649-7678703)
[»] scaffold0489 (5 HSPs)
scaffold0489 (15-227)||(6251-6468)
scaffold0489 (504-713)||(6663-6871)
scaffold0489 (500-713)||(5378-5581)
scaffold0489 (349-412)||(6569-6632)
scaffold0489 (249-296)||(6468-6515)
[»] scaffold0633 (1 HSPs)
scaffold0633 (593-713)||(6831-6950)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 25265038 - 25264760
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25265038 cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattg 25264940  T
Q  117 ggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25264939 ggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttagtg 25264840  T
Q  217 ttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25264839 ttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 25264760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 33294787 - 33295066
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33294787 cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaatttttttaatattg 33294886  T
Q  117 ggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33294887 ggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattattaataaaagtttagttgggactatgaacattgtggattttagtg 33294986  T
Q  217 ttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33294987 ttgagatgttaatctgaccattatcaatggggattttgtttgggtttatgagaagttgtctattgagagtgagatgatga 33295066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 25264555 - 25264343
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25264555 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 25264456  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||          |||| |||||||||||||||||||||||||| ||||| |||    
T  25264455 gagggacgaaaatcaaaaagttattaatttacagggattgttttaaaac-aaaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacg 25264357  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  25264356 atttacatatttaa 25264343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 531 - 713
Target Start/End: Original strand, 25265780 - 25265961
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25265780 tgccacgtcaggcactaccacgtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 25265879  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||||||||||||||||          ||||||||||||||| ||||||||||||||| ||||  |||||||| ||||||||    
T  25265880 tagggattgttttaaaac-aaaaaaagatacagggacgaaaacaaaaaacacgccaaattacagagacgatttacatatttaa 25265961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 33294158 - 33293942
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggca----ctgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttg 595  Q
    |||||||||||| |||||||||||||||||||| |||| ||| ||    ||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  33294158 tccctctcactgcgtgactcatcaataagtttgtcacgccag-catcgtctgccacgtcatcctctgtttgccacatgtgcgtttttgtaacggaagttg 33294060  T
Q  596 acgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacagg 695  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||||| |||          |||| ||||||||||||||||| || ||||| ||| |    
T  33294059 acgggagggacgaaaatcaaaaagttattaatttataggggttgttttagaacaaaaaaaagatacaaggacgaaaaccaaaaacgcgtcaaattacaag 33293960  T
Q  696 tacgatttaaatatttaa 713  Q
     |||||||| ||||||||    
T  33293959 gacgatttatatatttaa 33293942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 531 - 713
Target Start/End: Original strand, 33295321 - 33295501
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||||||||||||||  ||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33295321 tgccacgtcaggcactatcacgtcatcctttgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaactta 33295420  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    || || |||||||| |||          ||||||||| ||||| ||||||||||||||| ||||  |||||||| ||||||||    
T  33295421 caagggttgttttagaac--aaaaaagatacagggacaaaaacaaaaaacacgccaaattacagagacgatttacatatttaa 33295501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 25264707 - 25264643
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25264707 gatgaatttatgaagacaatgatgaagatgttaaagaggtggaaggaagaagatgaagaaagcta 25264643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 33295119 - 33295183
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33295119 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 33295183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 592
Target Start/End: Original strand, 27167128 - 27167220
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaag 592  Q
    ||||||||||||||||||||||||   ||||||||||||||| |||||||| ||||||||| ||||| ||  ||| |||||||||||| ||||    
T  27167128 tccctctcactgtgtgactcatcatccagtttgccacgtcagtcactgccatatcatcctctgtttgtcatgtgtacgtttttgtaacagaag 27167220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 622
Target Start/End: Complemental strand, 45447174 - 45447099
Alignment:
Q  547 gccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagtta 622  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||| | |||||| |||||||||  |||||||||||    
T  45447174 gccacatcagcctccgttagccacatgtgcgtttttttaacggatggtgacggcagggacgaatttcaaaaagtta 45447099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 713
Target Start/End: Original strand, 3158039 - 3158093
Alignment:
Q  659 tacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||||||||||||||||||| || | ||||| |||||||| ||||||||    
T  3158039 tacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaa 3158093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 643
Target Start/End: Complemental strand, 27166914 - 27166837
Alignment:
Q  566 gccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttt 643  Q
    ||||||||  |||||||||||| |||| | |||||||| ||||||||||||| | ||  ||||||||||||| |||||    
T  27166914 gccacatgcacgtttttgtaacagaagctaacgggaggaacgaaaatcaaaacgatagcaacttacagggatggtttt 27166837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 644
Target Start/End: Original strand, 39885973 - 39886064
Alignment:
Q  553 tcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||||||||||   |||||||||||| ||   |||||| |||||| |||| ||||| | |  |||||||||||| ||||||||    
T  39885973 tcatcctccgtttgccacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgtttta 39886064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 579 - 633
Target Start/End: Original strand, 31917618 - 31917672
Alignment:
Q  579 ttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacag 633  Q
    |||||||||| || || |||||||||||||||||  |||| ||||||||||||||    
T  31917618 ttttgtaacgaaaattaacgggagggacgaaaatagaaaatttattaacttacag 31917672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 53355798 - 53355519
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53355798 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaa--tcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 53355701  T
Q  115 tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53355700 tgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttag 53355601  T
Q  215 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53355600 tgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 53355519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 19995414 - 19995696
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19995414 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaata 19995513  T
Q  114 ttgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatttta 213  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19995514 ttgggaatttgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatttta 19995613  T
Q  214 gtgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19995614 gtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 19995696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 55948294 - 55948575
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnn--tcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55948294 cagagatgcgagatcaatgatgagacgagagttggtaatgaaaacaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 55948393  T
Q  115 tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 214  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55948394 tgggaattcgagtattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 55948493  T
Q  215 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55948494 tgttgagatgtcaatctgaccattgtcaatggagattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 55948575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 44252307 - 44252028
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattg 116  Q
    |||||||||||||||||||||||||| |||||||||||||         ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44252307 cagagatgcgagatcaatgatgagacaagagttggtaatgaaaaaaaaatcattctttaggttttttaatttgagaattttgtgaattttttcaatattg 44252208  T
Q  117 ggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtg 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  44252207 ggaattcgatcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgagactatgaacattgtggattttagtg 44252108  T
Q  217 ttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44252107 ttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 44252028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 67 - 293
Target Start/End: Complemental strand, 39653829 - 39653603
Alignment:
Q  67 cattctttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgattttga 166  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||| |||    
T  39653829 cattctttaggtttttcaatttggaagttttgtgaattttttcaatattgagaatttgagcattctcaatgaggactttgttgttataatttgattatga 39653730  T
Q  167 tattatcaataaaagtttagttgggactatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtg 266  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||    
T  39653729 tattatcaataagaattttgttgggactatgaacattgtggattttagtgttgaggcgtcaatctgaccattatcaatggggattttgtttgggtttgtg 39653630  T
Q  267 agaagttgtctattgagagtgagatga 293  Q
    ||| ||||||||||||| | |||||||    
T  39653629 agatgttgtctattgagggcgagatga 39653603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 500 - 713
Target Start/End: Original strand, 19995898 - 19996110
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||    
T  19995898 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacgtcatcatccatttgccacatgtgcgtttttgtaacggaagttgatgg 19995997  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||          ||||||||| ||||||||||||||||||||| ||||| |||    
T  19995998 gagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac-aaaaaaagatacagggaccaaaaccaaaaacacgccaaattacagggacg 19996096  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  19996097 atttacatatttaa 19996110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 19994713 - 19994501
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  19994713 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactagcacgtcatggtccgtttgccacatgtgcgtttttgtaacggaagttgacgg 19994614  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| |||          ||||||||||||||||||||||||||||||| ||||| |||    
T  19994613 gagggacgaaaatcaaaaagttattaacttataggggttgttttagaac-aaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacg 19994515  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  19994514 atttacatatttaa 19994501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 44251820 - 44251608
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  44251820 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcacttccatgtcatcctctgtttgccacatgtgcgtttttgtaacggaagttgacgg 44251721  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||          |||| |||||||||||||||||||||||||| ||||| |||    
T  44251720 gagggacgaaaatcaaaaagttattaacttacaagggttgttttagaac-aaaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacg 44251622  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  44251621 atttacatatttaa 44251608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 500 - 644
Target Start/End: Complemental strand, 53355315 - 53355171
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53355315 tccctctcactgtgtgactcatcaataagtttgccacgtcatgcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggcagttgacgg 53355216  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  53355215 gagggacgaaaatcaaaaagttattaacttacaggggttgtttta 53355171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 531 - 713
Target Start/End: Original strand, 55948828 - 55949009
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  55948828 tgccacgtcaggcactgccacgtcatcctctgtttgccacatgtgcgtttttgtaacggaagttgacgggagggaagaaaatccaaaagttattaactta 55948927  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||| |||||||| |||          ||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||    
T  55948928 caggggttgttttagaac-aaaaaaagatacagggacgaaaaccaaaaacacgccaaattacaaggacgatttacatatttaa 55949009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 531 - 713
Target Start/End: Complemental strand, 18597816 - 18597635
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18597816 tgccacgtcaggcactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 18597717  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    | | | |||||||| ||           ||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||    
T  18597716 cggaggttgttttagaa-taaaaaaagatacagggacgaaaaccaaaaacacggcaaattacatggacgatttaaatatttaa 18597635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 531 - 713
Target Start/End: Original strand, 44253067 - 44253248
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||| || ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44253067 tgccatgttaggcactaccacgccatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagagacgaaaatcaaaaagttattaactta 44253166  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||| |||||||| |||          || |||||||||||||||||||||||||||| | ||| |||||||| ||||||||    
T  44253167 taggggttgttttagaac-aaaaaaagatatagggacgaaaaccaaaaacacgccaaattaaagggacgatttacatatttaa 44253248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 531 - 713
Target Start/End: Complemental strand, 55947544 - 55947363
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||| ||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  55947544 tgccacgttaggcactaccacatcatcctccatttgccacatgtgcatttttataacggaagttgacgggagggacgaaaatcaaaaagttattaactta 55947445  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     ||||  ||||||| |||          ||||||||||||||||||||| ||| ||||| ||||| |||||||| ||||||||    
T  55947444 taggggctgttttataac-aaaaaaagatacagggacgaaaaccaaaaatacgtcaaattacagggacgatttacatatttaa 55947363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 19995745 - 19995809
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19995745 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 19995809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 44251972 - 44251908
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44251972 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 44251908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 53355468 - 53355404
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  53355468 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 53355404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 575 - 713
Target Start/End: Original strand, 42978838 - 42978975
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||| ||  ||||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||          ||||||||||||||||    
T  42978838 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaaattattaacttacaaggattgttttagaac-aaaaaaagatacagggacgaaaacc 42978936  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||| ||| | |||||||| ||||||||    
T  42978937 aaaaacacgccaaattacaaggacgatttacatatttaa 42978975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 575 - 713
Target Start/End: Original strand, 48713381 - 48713518
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||| ||  ||||| ||||||||||||| ||||| ||||||||||||||||| |||||||| |||          ||||||||||||||||    
T  48713381 gcgtttttgtaacagagtttgactggagggacgaaaagcaaaaggttattaacttacaggggttgttttagaacaaaaaaaga-tacagggacgaaaacc 48713479  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||| ||||| |||||||| ||||||||    
T  48713480 aaaaacacgccaaattacagggacgatttacatatttaa 48713518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 575 - 713
Target Start/End: Original strand, 32082552 - 32082689
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||| ||  ||||| ||||||||||||| ||||||||||||||||||||||| || ||||| |||          ||||||||||||||||    
T  32082552 gcgtttttgtaacagagtttgacaggagggacgaaaagcaaaaagttattaacttacaggggttattttagaac-aaaaaaagatacagggacgaaaacc 32082650  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||| ||| | |||||||| ||||||||    
T  32082651 aaaaacacgccaaattacacggacgatttacatatttaa 32082689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 575 - 713
Target Start/End: Complemental strand, 42977338 - 42977201
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||| ||  ||||||||||||||||||| |||||||||||||||||| | || |||||||| |||          ||||||||||||||||    
T  42977338 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttaaatgggttgttttagaac-aaaaaaagatacagggacgaaaacc 42977240  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||| ||| | |||||||| ||||||||    
T  42977239 aaaaacacgccaaattacaaggacgatttacatatttaa 42977201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 575 - 713
Target Start/End: Original strand, 54123464 - 54123601
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    |||||||||| || ||  ||||||||||||||||||| ||||||||||||||||||||||  |||||||| |||          ||||||||||||||||    
T  54123464 gcgtttttgttacagagtttgacgggagggacgaaaagcaaaaagttattaacttacaggagttgttttagaac-aaaaaaatatacagggacgaaaacc 54123562  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||| ||||||| ||||| |||||||| ||||||||    
T  54123563 aaaaacatgccaaattacagggacgatttacatatttaa 54123601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 575 - 648
Target Start/End: Original strand, 10338087 - 10338160
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaac 648  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  10338087 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttaaaac 10338160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 575 - 713
Target Start/End: Complemental strand, 10337244 - 10337107
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    |||| |||||||| ||  ||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||          |||| |||||||||||    
T  10337244 gcgtctttgtaacagagtttgacgggagggatgaaaagcaaaaggttattaacttacaggggttgttttagaacaaaaaaaga-tacaaggacgaaaacc 10337146  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||| ||||| |||||||| ||||||||    
T  10337145 aaaaacacgccaaattacagggacgatttacatatttaa 10337107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 54121967 - 54121898
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||| ||  || |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  54121967 gcgtttttgtaacagagtttaacgggagggacgaaaagcaaaaagttattaacttacaggggttgtttta 54121898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 349 - 412
Target Start/End: Original strand, 55948631 - 55948691
Alignment:
Q  349 atgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||    
T  55948631 atgaatttatgaagac---gatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 55948691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 500 - 587
Target Start/End: Original strand, 36139714 - 36139801
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaac 587  Q
    |||||||| || ||||||||||||   ||||||||||||||| ||||||||||| |||||| ||| ||||| ||| ||||||||||||    
T  36139714 tccctctccctctgtgactcatcatccagtttgccacgtcagtcactgccacataatcctcggttagccacgtgtacgtttttgtaac 36139801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 659 - 713
Target Start/End: Original strand, 18597856 - 18597910
Alignment:
Q  659 tacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  18597856 tacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 18597910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 575 - 632
Target Start/End: Original strand, 16880408 - 16880465
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttaca 632  Q
    ||||||||||||| ||  |||||||||||||||| || ||||||||||||||||||||    
T  16880408 gcgtttttgtaacagagtttgacgggagggacgataagcaaaaagttattaacttaca 16880465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 553 - 622
Target Start/End: Complemental strand, 39637431 - 39637362
Alignment:
Q  553 tcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagtta 622  Q
    |||||||| |||| |||||||||||||||| |||| |||| | || ||||||||||||||||||| ||||    
T  39637431 tcatcctcagtttaccacatgtgcgtttttataacagaagctaacaggagggacgaaaatcaaaaggtta 39637362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 39653556 - 39653499
Alignment:
Q  352 aatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaag 409  Q
    |||||||||||| |||||||||||||  ||| |||||||| |||||||||||||||||    
T  39653556 aatttatgaagataatgatgaagatgaaaaaaaggtggaatgaagaagatgaagaaag 39653499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 44253018 - 44253059
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcag 541  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  44253018 tccctctcactgtgtgcctcatcaataagtttgccacgtcag 44253059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 500 - 537
Target Start/End: Original strand, 55948779 - 55948816
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacg 537  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55948779 tccctctcactgtgtgactcatcaataagtttgccacg 55948816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 647
Target Start/End: Complemental strand, 16879298 - 16879226
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaa 647  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||| ||||||| |||||| || | |||||||||    
T  16879298 gcgtttttgtaacagattttgacgggagggacgaaaagcaaaaggttattaccttacaagggtggttttaaaa 16879226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 575 - 713
Target Start/End: Complemental strand, 48711998 - 48711861
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||| ||  ||||||||| ||||||||||||||| ||||| ||||| ||||| || ||||| |||          |||| ||||||||||     
T  48711998 gcgtttttgtaaccgagtttgacgggaaggacgaaaatcaaaatgttatcaacttgcaggggttattttagaac-aaaaaaagatacaaggacgaaaaca 48711900  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||| |||| ||| | |||||||| ||||||||    
T  48711899 aaaaacacgcaaaattacaaggacgatttacatatttaa 48711861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 508 - 540
Target Start/End: Complemental strand, 55947585 - 55947553
Alignment:
Q  508 actgtgtgactcatcaataagtttgccacgtca 540  Q
    |||||||||||||||||||||||||||||||||    
T  55947585 actgtgtgactcatcaataagtttgccacgtca 55947553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 578 - 644
Target Start/End: Complemental strand, 3069061 - 3068995
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||| || | | ||||||||||||||||||||||  ||  ||| |||||||||||||||||    
T  3069061 tttttgtaacagatgctaacgggagggacgaaaatcaaaacatttgtaatttacagggattgtttta 3068995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 636
Target Start/End: Original strand, 24039753 - 24039843
Alignment:
Q  546 tgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggga 636  Q
    ||||||||||||||||| | ||||| ||| | |||||||||| |||| | ||||||||||| |||| ||| | |||| ||| ||| |||||    
T  24039753 tgccacatcatcctccgatagccacgtgtacatttttgtaacagaagctaacgggagggacaaaaagcaacacgttaataatttataggga 24039843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 659 - 713
Target Start/End: Complemental strand, 24919109 - 24919055
Alignment:
Q  659 tacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||| ||||| ||||||||||||| || | |||||||||||||| ||||||||    
T  24919109 tacaggaacgaagaccaaaaacacgcaaacttacaggtacgatttacatatttaa 24919055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 659 - 713
Target Start/End: Complemental strand, 38157077 - 38157023
Alignment:
Q  659 tacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||||||||||||||||||| || | ||||| | |||||| ||||||||    
T  38157077 tacagggacgaaaaccaaaaacacgcgaacttacagggatgatttacatatttaa 38157023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 713
Target Start/End: Complemental strand, 54535034 - 54534981
Alignment:
Q  660 acagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||||||||||||| || | ||| | |||||||| ||||||||    
T  54535034 acagggacgaaaaccaaaaacacgcgaacttacatggacgatttacatatttaa 54534981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 33733875 - 33734158
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnn--tcattctttaggtttttcaatttgagaattttgtgaattttttcaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||    
T  33733875 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaat 33733974  T
Q  113 attgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33733975 attgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatttt 33734074  T
Q  213 agtgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33734075 agtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 33734158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 53528678 - 53528398
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53528678 cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatatt 53528579  T
Q  116 gggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  53528578 gggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggattttagt 53528479  T
Q  216 gttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53528478 gttgagatgtcaatctgaccattgtcaattggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 53528398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 500 - 713
Target Start/End: Original strand, 53529378 - 53529590
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53529378 tccctctcactgtgtgactcatcaataagtttgccacgttaggcactaccacatcatcctccgtttgccacatgtgcatttttgtaacggaagttgacgg 53529477  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    ||||||||||||||||||||||||||||||| ||||  | ||||| |||          ||||||||||||||| ||||| ||||||||| ||||| |||    
T  53529478 gagggacgaaaatcaaaaagttattaacttataggggctattttagaac-aaaaaaagatacagggacgaaaactaaaaatacgccaaattacagggacg 53529576  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  53529577 atttacatatttaa 53529590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 53528188 - 53527973
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggca----ctgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttg 595  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||    ||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  53528188 tccctctcaccgtgtgactcatcaataagtttgccacgtcag-catcgtctgccacgtcatcctctgtttgccacatgtgcgtttttgtaacggaagttg 53528090  T
Q  596 acgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacagg 695  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||| |||          ||||||||||||||||||||||||||||||| | |||    
T  53528089 acgggagggacgaaaatcaaaaagttattaacttacaggagttgttttagaac-aaaaaaagatacagggacgaaaaccaaaaacacgccaaattaaagg 53527991  T
Q  696 tacgatttaaatatttaa 713  Q
     |||||||| | ||||||    
T  53527990 gacgatttacacatttaa 53527973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 531 - 713
Target Start/End: Complemental strand, 33733149 - 33732968
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33733149 tgccacgtcaggcactagcacgtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggaaggacgaaaatcaaaaagttattaactta 33733050  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||| |||||||| |||          |||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  33733049 taggggttgttttagaac-aaaaaaaaatacaggaacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 33732968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 546 - 713
Target Start/End: Original strand, 33734392 - 33734558
Alignment:
Q  546 tgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaa 645  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||     
T  33734392 tgccacgtcatcctctgtttgccacatgtgcgtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttacaggggttgttttag 33734491  T
Q  646 aacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||          |||||| || |||||||||||||||| |||| ||||| |||||||| ||||||||    
T  33734492 aac-aaaaaaagatacaggaaccaaaaccaaaaacacgctaaattacagggacgatttacatatttaa 33734558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 575 - 714
Target Start/End: Complemental strand, 31657094 - 31656955
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||| ||  ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||          |||| |||||||||||    
T  31657094 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacagggattgttttagaacaaaaaaaaaatacaaggacgaaaacc 31656995  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaat 714  Q
    ||||||| ||||||| ||||| |||||||| |||||||||    
T  31656994 aaaaacatgccaaattacagggacgatttacatatttaat 31656955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 575 - 713
Target Start/End: Original strand, 41083189 - 41083327
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||          ||| ||||||||||||    
T  41083189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaaagatacggggacgaaaacc 41083288  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||| || | ||||| ||  |||| ||||||||    
T  41083289 aaaaacacgcaaacttacagggaccttttacatatttaa 41083327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 31796753 - 31796822
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31796753 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgtttta 31796822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 48568449 - 48568518
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48568449 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgtttta 48568518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 40499171 - 40499240
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  40499171 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttaccggggttgtttta 40499240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 33734208 - 33734272
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33734208 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 33734272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 53528338 - 53528277
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    |||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||    
T  53528338 gatgaatttatgaagac---gatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 53528277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 578 - 713
Target Start/End: Complemental strand, 41081939 - 41081805
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaa 677  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||| |||          |||||||||||||||||||    
T  41081939 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac-aaaaaaagatacagggacgaaaaccaaa 41081841  T
Q  678 aacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||| || | ||||| ||  |||| ||||||||    
T  41081840 aacacgcgaacttacagggaccttttacatatttaa 41081805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 578 - 644
Target Start/End: Complemental strand, 31795510 - 31795444
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||||||| ||||||||    
T  31795510 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgtttta 31795444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 578 - 644
Target Start/End: Complemental strand, 48567133 - 48567067
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||||||| ||||||||    
T  48567133 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgtttta 48567067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 500 - 540
Target Start/End: Original strand, 33734361 - 33734401
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtca 540  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33734361 tccctctcactgtgtgactcatcaataagtttgccacgtca 33734401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 500 - 532
Target Start/End: Complemental strand, 33733198 - 33733166
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttg 532  Q
    |||||||||||||||||||||||||||||||||    
T  33733198 tccctctcactgtgtgactcatcaataagtttg 33733166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 33258561 - 33258281
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33258561 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa-tcattctttaggtttttcaatttgagagttttgtgaattttttcaatat 33258463  T
Q  115 tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258462 tgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttag 33258363  T
Q  215 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258362 tgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 33258281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 33278733 - 33278453
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33278733 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa-tcattctttaggtttttcaatttgagagttttgtgaattttttcaatat 33278635  T
Q  115 tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33278634 tgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttagttgggactatgaacattgtggattttag 33278535  T
Q  215 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33278534 tgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 33278453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 7654621 - 7654900
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  7654621 cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttaagaattttgtgaatttt-tcaatatt 7654719  T
Q  116 gggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagt 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7654720 gggaattcgagtattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggattttagt 7654819  T
Q  216 gttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7654820 gttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgaaaagttgtctattgagagtgagatgatga 7654900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 19056986 - 19056707
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19056986 cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaatcattctttaggtttttcaatttgagaattttttgaattttttcaatattg 19056887  T
Q  117 ggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtg 216  Q
    | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||    
T  19056886 gaaatttgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagctgggactgtgaacattgtagattttagtg 19056787  T
Q  217 ttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  19056786 ttgagatgtcaatctgaccattatcaatgggaattttgtttaggtttgtcagaagttgtctattgagagtgagatgatga 19056707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 28920006 - 28920287
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28920006 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaacatcattctttaggtttttcaatttgagaattttgtgaattttttcaata 28920105  T
Q  114 ttgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatttta 213  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28920106 ttggaaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttag-tgggactatgaacattgtggatttta 28920204  T
Q  214 gtgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    |||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||    
T  28920205 gtgttgagatttcaatctgatcattgtcaatgggggttttgtttgggtttgtgagaagttgtctattgagagtgatatgatga 28920287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 36146278 - 36146555
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36146278 cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaatttt-tcaatattg 36146375  T
Q  117 ggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtg 216  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  36146376 ggaattcgagtattcacaatgaggattttgttattataatttgattttgatattatcaataaaagtttagctgagactatgaacattgtggattttagtg 36146475  T
Q  217 ttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36146476 ttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgaaaagttgtctattgagagtgagatgatga 36146555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 500 - 713
Target Start/End: Original strand, 33259216 - 33259428
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  33259216 tccctctcactgtgtgactcatcaataagttttccacgtcaggcactaccacgtcatcgtccgtttgccacatgtgcatttttgtaacggaagttgacgg 33259315  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||||||||          ||||||||||||||||||||||||||||||| ||||| ||     
T  33259316 gagggacgaaaattaaaaagttattaacttataggggttgttttaaaac-aaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggaca 33259414  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  33259415 atttacatatttaa 33259428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 500 - 713
Target Start/End: Original strand, 33279375 - 33279587
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  33279375 tccctctcactgtgtgactcatcaataagttttccacgtcaggcactaccacgtcatcgtccgtttgccacatgtgcatttttgtaacggaagttgacgg 33279474  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||||||||          ||||||||||||||||||||||||||||||| ||||| ||     
T  33279475 gagggacgaaaattaaaaagttattaacttataggggttgttttaaaac-aaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggaca 33279573  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  33279574 atttacatatttaa 33279587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 500 - 704
Target Start/End: Original strand, 36146756 - 36146958
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||||||||||    
T  36146756 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacgtcatcctttctttgccacatgtgcgtttttgtaacggaagttgacgg 36146855  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||          |||| |||||||||||||||||||| ||||| ||||| |||    
T  36146856 gagggacgaaaatcaaaaagttattaacttacatggattgttttagaac-aaaaaaagataca-ggacgaaaaccaaaaacacgtcaaattacagggacg 36146953  T
Q  700 attta 704  Q
    |||||    
T  36146954 attta 36146958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 73 - 296
Target Start/End: Original strand, 24088702 - 24088927
Alignment:
Q  73 ttaggtttttcaatttgagaattttgtgaattttttcaatattgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattat 172  Q
    ||||||||||||||||  |||||||   ||||||||||| ||||||||||| |||||||  |||||||||||| |||||||||||||||| |||||||||    
T  24088702 ttaggtttttcaattttggaattttcgtaattttttcaaaattgggaattcaagcattcttaatgaggatttttttgttataatttgattatgatattat 24088801  T
Q  173 caataaaagtttagttgggac--tatgaacattgtggattttagtgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaa 270  Q
    |||||| ||||| ||| ||||  |||| |||||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||    
T  24088802 caataagagttttgttaggactatatggacattgtggattttggtgttgagatgtcaatctgtccactgtcaatgagaattttgtttaggtttgtgagaa 24088901  T
Q  271 gttgtctattgagagtgagatgatga 296  Q
    ||||| |||||||  ||| |||||||    
T  24088902 gttgtgtattgaggatgatatgatga 24088927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 531 - 713
Target Start/End: Original strand, 7655139 - 7655320
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7655139 tgccatgtcaggcactgccacgtcatcctctgtttgccacatgtgcgtttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaactta 7655238  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||| |||||||| |||          ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  7655239 caggggttgttttagaac-aaaaaaagatacagggacgaaaaccaaaaacacgccaaattacaggaacgatttacatatttaa 7655320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 28919301 - 28919086
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggca----ctgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttg 595  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28919301 tccctctcactgtgtgactcatcaataagtttgtcacgtcag-catcgtctgccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttg 28919203  T
Q  596 acgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacagg 695  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||||| |||          |||||||| ||||| |||||||||||||||| |||||    
T  28919202 acggaagggacgaaaatcaaaaagttattaacttataggggttgttttagaac-aaaaaaagatacagggatgaaaatcaaaaacacgccaaattacagg 28919104  T
Q  696 tacgatttaaatatttaa 713  Q
     || ||||| ||||||||    
T  28919103 gacaatttatatatttaa 28919086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 531 - 713
Target Start/End: Original strand, 16673131 - 16673312
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16673131 tgccacgtcaggcactaccacgtcatcctctgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 16673230  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||| |||||||| |||          |||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||    
T  16673231 taggggttgttttagaac-aaaaaaagatacagggacgaaaaccaaaaacacgcaaaattacagggacgatttacatatttaa 16673312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 510 - 713
Target Start/End: Original strand, 28920506 - 28920711
Alignment:
Q  510 tgtgtgactcatcaataagtttgccacgtcaggca----ctgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggaggga 605  Q
    |||||||||||||||||||||||||| | ||| ||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28920506 tgtgtgactcatcaataagtttgccatgccag-catcgtctgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggaggga 28920604  T
Q  606 cgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaa 705  Q
    |||||||||||| ||||||||||||||||| |||||||| |||          ||||||||| ||||| ||||||||||||||| ||||| |||| |||     
T  28920605 cgaaaatcaaaaggttattaacttacaggggttgttttagaac-aaaaaaagatacagggacaaaaacaaaaaacacgccaaattacagggacgacttac 28920703  T
Q  706 atatttaa 713  Q
    ||||||||    
T  28920704 atatttaa 28920711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 531 - 713
Target Start/End: Complemental strand, 36145528 - 36145347
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36145528 tgccacgttaggcactaccacgtcatcctccgtttgccacatgtgcatttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaactta 36145429  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||| |||||||| |||          ||||||||||||||| ||||| ||||||||| ||||| |||||||| ||||||||    
T  36145428 taggggttgttttagaac-aaaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaa 36145347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 33258080 - 33257884
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    ||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||| ||||||||||||||||||||||||||    
T  33258080 tccctctcactgtgtgactcatcaataagtttgccacg---------------tcatcctccgtttgccacatttgcgtttttgtaacggaagttgacgg 33257996  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||          |||| |||| ||||||||||||||||||||| ||||| |||    
T  33257995 gagggacgaaaatcaaaaagttattaacttacaggg-ttgttttagaac-aaaaaaagatacaaggacaaaaaccaaaaacacgccaaattacagggacg 33257898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 33278252 - 33278056
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    ||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||| ||||||||||||||||||||||||||    
T  33278252 tccctctcactgtgtgactcatcaataagtttgccacg---------------tcatcctccgtttgccacatttgcgtttttgtaacggaagttgacgg 33278168  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||          |||| |||| ||||||||||||||||||||| ||||| |||    
T  33278167 gagggacgaaaatcaaaaagttattaacttacaggg-ttgttttagaac-aaaaaaagatacaaggacaaaaaccaaaaacacgccaaattacagggacg 33278070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 531 - 713
Target Start/End: Complemental strand, 7653870 - 7653689
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  7653870 tgccacgttaggcactaccacgtcatcctccgtttgccacatgtgcatttttgtaatggaagttgacgggagggacaaaaatcaaaaagttattaactta 7653771  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     ||||  ||||||| |||          ||||||||||||||| ||||| ||||||||| ||||| |||||||| ||||||||    
T  7653770 taggggctgttttagaac-aaaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaa 7653689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 531 - 644
Target Start/End: Original strand, 19057742 - 19057855
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  19057742 tgccacatcaggcactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacagaagttgacggaagggacgaaaataaaaaagttattaactta 19057841  T
Q  631 cagggattgtttta 644  Q
     |||| ||||||||    
T  19057842 taggggttgtttta 19057855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 555 - 644
Target Start/End: Complemental strand, 16672815 - 16672726
Alignment:
Q  555 atcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||    
T  16672815 atcctctgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaacttataggggttgtttta 16672726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 561 - 626
Target Start/End: Complemental strand, 1969701 - 1969636
Alignment:
Q  561 cgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaa 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969701 cgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaa 1969636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 500 - 622
Target Start/End: Original strand, 33485169 - 33485291
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||| |||||   |||||||||||||||  ||||| ||||||||||||||| ||||||||| ||||||||||||  ||| | ||||    
T  33485169 tccctctcactgtgtgacccatcatccagtttgccacgtcagttactgcaacatcatcctccgttagccacatgtacgtttttgtaacacaagctaacgg 33485268  T
Q  600 gagggacgaaaatcaaaaagtta 622  Q
    |||||||||||| ||||| ||||    
T  33485269 gagggacgaaaagcaaaacgtta 33485291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 19056653 - 19056589
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19056653 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 19056589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 33258231 - 33258167
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33258231 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 33258167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 33278403 - 33278339
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33278403 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 33278339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 28920348 - 28920407
Alignment:
Q  353 atttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  28920348 atttatgaagacaatgatgaagatgtaaaagaggtgaaaggaagaagatgaagaaagcta 28920407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 576 - 711
Target Start/End: Original strand, 24438867 - 24439002
Alignment:
Q  576 cgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacca 675  Q
    |||||||||||| || | ||||||| |||||||||||||||| |||  |||||||||||| |||||||| |||          |||||||||||||||||    
T  24438867 cgtttttgtaacagatgctgacgggtgggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaacaaaaaaaagatacagggacgaaaacca 24438966  T
Q  676 aaaacacgccaaataacaggtacgatttaaatattt 711  Q
    ||||||||| || | ||||| |||||||| ||||||    
T  24438967 aaaacacgcgaatttacagggacgatttacatattt 24439002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 577 - 713
Target Start/End: Complemental strand, 41668411 - 41668276
Alignment:
Q  577 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaa 676  Q
    ||||||||||| ||  |||||||||| |||||||| ||||||||||||||||||||| | |||||||| |||          ||||| ||||||||||||    
T  41668411 gtttttgtaacagagtttgacgggagagacgaaaagcaaaaagttattaacttacagaggttgttttagaac-aaaaaaatatacagagacgaaaaccaa 41668313  T
Q  677 aaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||| ||||  |||||||| ||||||||    
T  41668312 aaacacgccaaattacagagacgatttacatatttaa 41668276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 547 - 622
Target Start/End: Original strand, 46605813 - 46605888
Alignment:
Q  547 gccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagtta 622  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||| | |||||| |||||||||  |||||||||||    
T  46605813 gccacatcagcctccgttagccacatgtgcgtttttttaacggatggtgacggcagggacgaatttcaaaaagtta 46605888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 575 - 713
Target Start/End: Original strand, 50316969 - 50317106
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||| || | |||||||||||||||||||||||| |||  |||||||||||| |||||||| |||          |||||||||||||| |    
T  50316969 gcgtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaac-aaaaaaagatacagggacgaaaatc 50317067  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||| || | ||| | |||||||| ||||||||    
T  50317068 aaaaacacgcgaacttacatggacgatttacatatttaa 50317106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 36146607 - 36146664
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaa 408  Q
    |||||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||    
T  36146607 gatgaatttatgaagac---gatgaagatgtaaaagaggtggaaggaagaagatgaagaaa 36146664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 7655090 - 7655131
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcag 541  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7655090 tccctctcactgtgtgactcatcaataagtttgccacgtcag 7655131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 22684069 - 22684138
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||| |||| ||||||||||| |||||||||| |||||||||||| || |||||||| ||||||||    
T  22684069 gcgtttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaatttacagggtttgtttta 22684138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 500 - 540
Target Start/End: Complemental strand, 7653919 - 7653879
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtca 540  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7653919 tccctctcactgtgtgactcatcaataagtttgccacgtca 7653879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 528 - 644
Target Start/End: Complemental strand, 24085698 - 24085582
Alignment:
Q  528 gtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaac 627  Q
    |||||||| ||||| ||||||||| ||||||   |||||||||||||| ||||||||||| |||| | ||  |||||| ||||||||||| ||||  ||     
T  24085698 gtttgccatgtcagacactgccacgtcatccgttgtttgccacatgtgtgtttttgtaacagaagctaacaagagggatgaaaatcaaaaggttaacaat 24085599  T
Q  628 ttacagggattgtttta 644  Q
    |||||||| ||| ||||    
T  24085598 ttacagggtttgcttta 24085582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 500 - 540
Target Start/End: Complemental strand, 36145577 - 36145537
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtca 540  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36145577 tccctctcactgtgtgactcatcaataagtttgccacgtca 36145537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 369 - 412
Target Start/End: Original strand, 7654959 - 7655002
Alignment:
Q  369 atgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  7654959 atgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 7655002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 659 - 713
Target Start/End: Complemental strand, 16592078 - 16592024
Alignment:
Q  659 tacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||    
T  16592078 tacagggacgaaaaccaaaaacacgccaaattacagggacaatttacatatttaa 16592024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 19251082 - 19251150
Alignment:
Q  576 cgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||||| ||  ||||| ||||||||||||| |||||| ||||||| |||||||| ||||||||    
T  19251082 cgtttttgtaacagagtttgactggagggacgaaaagcaaaaaattattaatttacaggggttgtttta 19251150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 19057693 - 19057734
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcag 541  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  19057693 tccctctcactgtgtgattgatcaataagtttgccacgtcag 19057734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 24088976 - 24089037
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaag 409  Q
    ||||||||||||| || ||| |||||||||  |||||| |||| ||||||||||||||||||    
T  24088976 gatgaatttatgatgataataatgaagatgaaaaagagatggacggaagaagatgaagaaag 24089037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 659 - 713
Target Start/End: Complemental strand, 31321066 - 31321012
Alignment:
Q  659 tacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||||||||||||||||||| || | ||||| | ||||||| |||||||    
T  31321066 tacagggacgaaaaccaaaaacacgcgaacttacagggatgatttaactatttaa 31321012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 635
Target Start/End: Complemental strand, 50315459 - 50315398
Alignment:
Q  574 tgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggg 635  Q
    ||||||||||||||||||||| |||  |||||| |||| ||||| ||||  |||||||||||    
T  50315459 tgcgtttttgtaacggaagttaacgttagggactaaaaccaaaaggttaacaacttacaggg 50315398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 31392990 - 31393268
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31392990 cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattg 31393088  T
Q  117 ggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtg 216  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31393089 gaaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgagactatgaacattgtggattttagtg 31393188  T
Q  217 ttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31393189 ttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 31393268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 45277105 - 45276827
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattg 116  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45277105 cagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatattg 45277007  T
Q  117 ggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45277006 ggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaattttagttgggactatgaacattgtggattttagtg 45276907  T
Q  217 ttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45276906 ttaagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 45276827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 8230954 - 8231232
Alignment:
Q  18 agagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgg 117  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8230954 agagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatattgg 8231053  T
Q  118 gaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||| ||||||||||    
T  8231054 gaattcgagcattcacaatgaggattttgttgttataatttgattttgatattaacaataaaagtttatttgagactatgaacattgtgaattttagtgt 8231153  T
Q  218 tgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||    
T  8231154 tgagatgtcaatctgaccattgtcaatggagattttgtttgggtttgtgagaagttgtctattgagaatgagatgatga 8231232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 32882053 - 32882329
Alignment:
Q  19 gagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatattggg 118  Q
    ||||||||||||||||||||||||||||||| ||||||         ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32882053 gagatgcgagatcaatgatgagacgagagtttgtaatgaaaaaaaaatcattctttaggtttttcaattttagaattttgtgaattttttcaatattggg 32882152  T
Q  119 aattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttagtgtt 218  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  32882153 agttcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaaaattagttcggactatgaacattgtggattttagtgtt 32882252  T
Q  219 gagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||| ||||||| |||||||||  ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  32882253 gagatgtcaatttgaccatagtcaatggg-gttttgtttgagtttgtgagaagttgtccattgagagtgagatgatga 32882329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 21715994 - 21716259
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21715994 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 21716092  T
Q  115 tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||               |||||||||||||    
T  21716093 tgggaattcgagcattcacaatgaggattttgttgttataatttgatttcgatattatcaataaaagtttag---------------ttgtggattttag 21716177  T
Q  215 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21716178 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 21716259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 500 - 713
Target Start/End: Original strand, 21716463 - 21716675
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21716463 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 21716562  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||| ||||| |||    
T  21716563 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaac-aaaaaaagatacagggacgaaaaccaaaaacacgccaaattacaggaacg 21716661  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  21716662 atttacatatttaa 21716675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 40029155 - 40028893
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnn--tcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 114  Q
    |||||||| |||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40029155 cagagatgtgagatcaatgatgagacgagagttggtaatgaaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttt-caatat 40029057  T
Q  115 tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 214  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||    
T  40029056 tggaaattcgagcattcataatgaggattttgttgttataatttgattttgatattatcaa------------------tatgaacattgtggattttag 40028975  T
Q  215 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40028974 tgttgagatgtcaatctgaccattgtcaatgaggattttgtttggttttgtgagaagttgtctattgagagtgagatgatga 40028893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 45276624 - 45276413
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45276624 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 45276525  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||          ||||||||| |||||||||||| |||||||| ||||| |||    
T  45276524 gagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac-aaaaaaagatacagggacaaaaaccaaaaactcgccaaattacagg-acg 45276427  T
Q  700 atttaaatatttaa 713  Q
    || || ||||||||    
T  45276426 atctacatatttaa 45276413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 500 - 713
Target Start/End: Original strand, 40029873 - 40030085
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  40029873 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactaccacgtcatccttcgtttgccacatgtgcgtttttgtaacggaagttgacgg 40029972  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    ||||||||||||||||||||||| ||||||| || | |||||||| |||          |||||||| |||||| ||||||||||||||| ||||| |||    
T  40029973 gagggacgaaaatcaaaaagttactaacttatagaggttgttttagaac-aaaaaaatatacagggatgaaaacaaaaaacacgccaaattacagggacg 40030071  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  40030072 atttacatatttaa 40030085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 508 - 713
Target Start/End: Complemental strand, 8230277 - 8230073
Alignment:
Q  508 actgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacg 607  Q
    |||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8230277 actgtgtgactcatcaataagtttgccacgtcagacactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgagagggacg 8230178  T
Q  608 aaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaat 707  Q
    ||||| ||||||||||||||||| |||| |||||||| |||          |||||||||||||||||||||||| |||||| ||||| |||||||| ||    
T  8230177 aaaataaaaaagttattaacttataggggttgttttagaac-aaaaaaagatacagggacgaaaaccaaaaacacaccaaattacagggacgatttacat 8230079  T
Q  708 atttaa 713  Q
    ||||||    
T  8230078 atttaa 8230073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 531 - 713
Target Start/End: Complemental strand, 21715256 - 21715075
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21715256 tgccacgtcaggcactaccacgtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 21715157  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||||||||||||||||          |||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||    
T  21715156 tagggattgttttaaaac-aaaaaaagatacagggacgaaaatcaaaaacacgccaaattacagggacgatttacatatttaa 21715075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 531 - 713
Target Start/End: Original strand, 45277842 - 45278023
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45277842 tgccacgtcaggcactatcacgtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 45277941  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||| ||||||||||||          ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  45277942 taggggttgttttaaaac-aaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 45278023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 531 - 713
Target Start/End: Original strand, 8231509 - 8231690
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8231509 tgccacgtcaggcactgtcacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagtgacgaaaatcaaaaagttattaactta 8231608  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||| |||||||| |||          ||||||||| ||||||||||||| ||||||| ||||| |||||||| ||||||||    
T  8231609 caggggttgttttagaac-aaaaaaagatacagggacaaaaaccaaaaacaagccaaattacagggacgatttacatatttaa 8231690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 531 - 713
Target Start/End: Original strand, 31393534 - 31393715
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||||||||||||||| ||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31393534 tgccacgtcaggcactgacatgtcatcctctgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaactta 31393633  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||| |||||||| |||          |||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  31393634 caggggttgttttataac-aaaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 31393715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 531 - 713
Target Start/End: Complemental strand, 31392242 - 31392061
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31392242 tgccatgttaggcactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttggcgggagggacgaaaatcaaaaagttattaactta 31392143  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||| |||||||| |||          ||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||    
T  31392142 taggggttgttttagaac-aaaaaaagatacagggacgaaaaccaaaaacacgtcaaattacagggacgatttacatatttaa 31392061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 531 - 713
Target Start/End: Complemental strand, 40028641 - 40028460
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||||| ||| ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40028641 tgccacgccagacactgccacgtcatcttctgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaactta 40028542  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||| |||||||| |||          ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  40028541 taggggttgttttagaac-aaaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 40028460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 531 - 644
Target Start/End: Complemental strand, 32881300 - 32881187
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||| |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32881300 tgccgcgtcagacactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaactta 32881201  T
Q  631 cagggattgtttta 644  Q
     |||| ||||||||    
T  32881200 taggggttgtttta 32881187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 531 - 701
Target Start/End: Original strand, 4675672 - 4675840
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    ||||||||||||  || |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4675672 tgccacgtcaggttctaccacgtcatcctctgtttgccgcatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 4675771  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgat 701  Q
     || | |||||||| |||          |||| ||||||||| |||||||||||||||| ||||| |||||    
T  4675772 tagtggttgttttagaac--aaaaaagatacatggacgaaaatcaaaaacacgccaaattacagggacgat 4675840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 531 - 644
Target Start/End: Original strand, 32882590 - 32882703
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||| || ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  32882590 tgccacgttagacactgccacgtcatcctatgtttgccacatgtgcgtttttgtaacggaagttgacggaagggacgaaaatcaaaaagtcattaactta 32882689  T
Q  631 cagggattgtttta 644  Q
     | || ||||||||    
T  32882690 taagggttgtttta 32882703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 46245262 - 46245193
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46245262 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgtttta 46245193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 14774652 - 14774583
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  14774652 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgtttta 14774583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 15225105 - 15225036
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  15225105 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgtttta 15225036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 8231304 - 8231368
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8231304 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 8231368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 21716311 - 21716375
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21716311 gatgaatttatgaagacaatgatgaagatgttaaagaggtggaaggaagaagatgaagaaagcta 21716375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 32882388 - 32882452
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32882388 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 32882452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 40028843 - 40028779
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40028843 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 40028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 45276777 - 45276713
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45276777 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 45276713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 31393333 - 31393397
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  31393333 gatgaatttatgaagacaatgatggagatgtaaaagaggtggaaggaagaagatgaagaaagcta 31393397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 15135518 - 15135449
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  15135518 gcgtttttgtaacaaaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgtttta 15135449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 30792749 - 30792818
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||||||  |  ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  30792749 gcgtttttgtaacaaagtttgacgggagggacgaaaagcaaaaagttattaacttacaggggttgtttta 30792818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 578 - 713
Target Start/End: Original strand, 46246497 - 46246631
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaa 677  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||| |||          |||||||||||||||||||    
T  46246497 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac-aaaaaaagatacagggacgaaaaccaaa 46246595  T
Q  678 aacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||| || | ||||| ||  |||| ||||||||    
T  46246596 aacacgcgaacttacagggaccttttacatatttaa 46246631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 575 - 629
Target Start/End: Complemental strand, 11747532 - 11747478
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 629  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  11747532 gcgtttttgtaacggaagtagacgggagggacggaaatcaaaaaattattaactt 11747478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 684
Target Start/End: Original strand, 12180559 - 12180666
Alignment:
Q  576 cgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacca 675  Q
    |||||||||||| || | |||||||||||||||||||||||| |||  |||||||||||| |||||||| |||          |||||||||||||||||    
T  12180559 cgtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaac-aaaaaaagatacagggacgaaaacca 12180657  T
Q  676 aaaacacgc 684  Q
    |||||||||    
T  12180658 aaaacacgc 12180666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 31393485 - 31393526
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcag 541  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31393485 tccctctcactgtgtgactcatcaataagtttgccacgtcag 31393526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 539
Target Start/End: Complemental strand, 40028689 - 40028651
Alignment:
Q  501 ccctctcactgtgtgactcatcaataagtttgccacgtc 539  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40028689 ccctctcactgtgtgactcatcaataagtttgccacgtc 40028651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 15136859 - 15136927
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||| |||| |||||||||||| |||| ||||||||||||||||||||||| || || ||||||||    
T  15136859 gcgtttttttaacagaagttgacggg-gggatgaaaatcaaaaagttattaacttgcaagggttgtttta 15136927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 9532534 - 9532602
Alignment:
Q  576 cgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||||| ||  |||| |||||||||||||| |||||||||||||| |||| ||| ||||||||    
T  9532534 cgtttttgtaacagagtttgatgggagggacgaaaagcaaaaagttattaatttactggggttgtttta 9532602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 586 - 629
Target Start/End: Original strand, 31734685 - 31734728
Alignment:
Q  586 acggaagttgacgggagggacgaaaatcaaaaagttattaactt 629  Q
    |||||||||||||||||| |||||||||||||| ||||||||||    
T  31734685 acggaagttgacgggaggaacgaaaatcaaaaatttattaactt 31734728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 632
Target Start/End: Complemental strand, 37131972 - 37131918
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttaca 632  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||  |||||||||    
T  37131972 tttttgtaacggaagttgacggaagggacgaaaaccaaaacgtttataacttaca 37131918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 635
Target Start/End: Complemental strand, 11669982 - 11669921
Alignment:
Q  574 tgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggg 635  Q
    ||||||||||||||||||||| |||  |||||| |||||||||| ||||  |||||||||||    
T  11669982 tgcgtttttgtaacggaagttaacgttagggactaaaatcaaaaggttaacaacttacaggg 11669921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 500 - 532
Target Start/End: Original strand, 32882541 - 32882573
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttg 532  Q
    |||||||||||||||||||||||||||||||||    
T  32882541 tccctctcactgtgtgactcatcaataagtttg 32882573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 553 - 644
Target Start/End: Original strand, 13420183 - 13420274
Alignment:
Q  553 tcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||| ||||||||||||||   |||||||||||||||   |||||| |||||| |||| ||||| | |  |||||||||||| ||||||||    
T  13420183 tcatcatccgtttgccacatagacgtttttgtaacggattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgtttta 13420274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 531
Target Start/End: Complemental strand, 21715305 - 21715274
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagttt 531  Q
    ||||||||||||||||||||||||||||||||    
T  21715305 tccctctcactgtgtgactcatcaataagttt 21715274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 578 - 644
Target Start/End: Original strand, 11671208 - 11671274
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||| || | ||||| ||||||||||||||||||  ||  |||||||||||| ||||||||    
T  11671208 tttttgtaacagatgctgacgagagggacgaaaatcaaaacatttgtaacttacagggtttgtttta 11671274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 21914451 - 21914413
Alignment:
Q  593 ttgacgggagggacgaaaatcaaaaagttattaacttac 631  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  21914451 ttgacgggaggaacgaaaaacaaaaagttattaacttac 21914413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 644
Target Start/End: Original strand, 11748887 - 11748940
Alignment:
Q  591 agttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||| |||||||||| |||||||||||| |||||| | || ||||||||    
T  11748887 agttgacggtagggacgaaattcaaaaagttatcaacttataaggtttgtttta 11748940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 533
Target Start/End: Complemental strand, 31392291 - 31392258
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgc 533  Q
    |||||||||||||||| |||||||||||||||||    
T  31392291 tccctctcactgtgtgcctcatcaataagtttgc 31392258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 235; Significance: 1e-129; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 1418114 - 1417833
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1418114 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 1418015  T
Q  115 tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  1418014 tgggaattcgagcattcacagtgaggattttgttgttataatttgattttgatattatcaataaaagtttatttaggactatgaacattgtggattttag 1417915  T
Q  215 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  1417914 tgttgagatgtcaatctgaccattgtcaatggggattttgattgggtttgtgagaagttgtctattgagagtgagatgatga 1417833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 30333368 - 30333646
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30333368 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaattttt-caatat 30333465  T
Q  115 tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30333466 tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagt-gggactatgaacattgtggattttag 30333564  T
Q  215 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30333565 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagggagatgatga 30333646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 25915398 - 25915115
Alignment:
Q  17 cagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnn---tcattctttaggttttt-caatttgagaattttgtgaattttttcaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25915398 cagagatgcgagatcaatgatgagacgagagttggtaatgagaaaaaaaaaatcattctttaggttttttcaatttgagaattttgtgaattttttcaat 25915299  T
Q  113 attgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatttt 212  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25915298 attgggaatttgagcattcacaatgaggattttgttgttatgatttgattttgatattatcaataaaagtttagctgggactatgaacattgtggatttt 25915199  T
Q  213 agtgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  25915198 agtgttgagatgtcaatctgaccattgtcaatggggattttgtttgggtttgtgggaagttgtctattgagagtgagatgatga 25915115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 500 - 648
Target Start/End: Complemental strand, 25914705 - 25914557
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25914705 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 25914606  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaac 648  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  25914605 gagggacgaaaataaaaaagttattaactaacaggggttgttttaaaac 25914557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 500 - 713
Target Start/End: Original strand, 1418780 - 1418992
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  1418780 tccctctcactgtgtgactcatcaataagtttgccacgtcagacactaccacgtcatcctccgtttgccgcatgtgcgtttttgtaacggaagttgacgg 1418879  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| |||          ||||||||||||||| ||||||||| ||||| ||||| |||    
T  1418880 gagggacgaaaatcaaaaagttattaacttataggggttgttttagaac-aaaaaaagatacagggacgaaaacaaaaaacacgtcaaattacagggacg 1418978  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  1418979 atttacatatttaa 1418992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 500 - 713
Target Start/End: Original strand, 30333852 - 30334063
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  30333852 tccctcgcactgtgtgactcatcaataagtttgccacgtcaggcactgccatgtcatcctccgtttgccacatgtgcg-ttttgtaatggaagttgacgg 30333950  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||          ||||||||| ||||||||||||||||||||| | ||| |||    
T  30333951 gagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac-aaaaaaagatacagggacaaaaaccaaaaacacgccaaattatagggacg 30334049  T
Q  700 atttaaatatttaa 713  Q
    | ||| ||||||||    
T  30334050 acttacatatttaa 30334063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 500 - 635
Target Start/End: Complemental strand, 1417626 - 1417491
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||| | |||||||||||||||||||    
T  1417626 tccctctcactgtgtgactcatcaataagtttgccacgtcagacactgtcccgtcatcctccgtttgccacatgtgcggtattgtaacggaagttgacgg 1417527  T
Q  600 gagggacgaaaatcaaaaagttattaacttacaggg 635  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1417526 gagggacgaaaataaaaaagttattaacttacaggg 1417491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 506 - 713
Target Start/End: Complemental strand, 30332495 - 30332286
Alignment:
Q  506 tcactgtgtgactcatcaataagtttgccacgtcaggca----ctgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacggga 601  Q
    |||||||||||||||||||||||||||||||||||| ||    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  30332495 tcactgtgtgactcatcaataagtttgccacgtcag-cattgtctgccacgtcatcctccgttttccacatgtgcgtttttgtaacggaagttgacagga 30332397  T
Q  602 gggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgat 701  Q
    ||||||||||||||||||||||||||||| |||| |||||||| |||          ||||||||||||||| ||||| ||||||||| ||||| |||||    
T  30332396 gggacgaaaatcaaaaagttattaacttataggggttgttttagaac-aaaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgat 30332298  T
Q  702 ttaaatatttaa 713  Q
    ||| ||||||||    
T  30332297 ttacatatttaa 30332286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 531 - 713
Target Start/End: Original strand, 25916153 - 25916334
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25916153 tgccacgtcaggcactaccacatcatcctccgtttaccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaactta 25916252  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||| |||||||| |||          ||||||||| ||||||||||||||||||||| ||| | |||||||| ||||||||    
T  25916253 taggggttgttttagaac-aaaaaaagatacagggacaaaaaccaaaaacacgccaaattacatggacgatttacatatttaa 25916334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 38624856 - 38624787
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  38624856 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgtttta 38624787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 1417780 - 1417716
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1417780 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 1417716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 578 - 644
Target Start/End: Original strand, 17554925 - 17554991
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  17554925 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgtttta 17554991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 25914857 - 25914793
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  25914857 gatgaatttatgaagacaatgatgaatatgtaaaagaggtggaaggaagaagatgaagaaagcta 25914793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 579 - 644
Target Start/End: Original strand, 11772623 - 11772688
Alignment:
Q  579 ttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||    
T  11772623 ttttgtaacggaagttgacaggagggacgaaaatcaaaaagttattaacttacaagggttgtttta 11772688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 578 - 713
Target Start/End: Complemental strand, 36619682 - 36619547
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaa 677  Q
    |||||||||| ||  ||||||||||||||||||| ||||||| |||||||||| |||| |||||||| |||          |||||||||||||| ||||    
T  36619682 tttttgtaacagagtttgacgggagggacgaaaagcaaaaagctattaacttataggggttgttttagaacaaaaaaaagatacagggacgaaaatcaaa 36619583  T
Q  678 aacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||||| | ||| |||||||| ||||||||    
T  36619582 aacacgccaaattatagggacgatttacatatttaa 36619547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 353 - 412
Target Start/End: Original strand, 30333704 - 30333763
Alignment:
Q  353 atttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  30333704 atttatgaagacaatgatgaagatgtataagaggtggaaggaagaagatgaagaaagcta 30333763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 578 - 713
Target Start/End: Original strand, 8874196 - 8874330
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaa 677  Q
    |||||||||| ||  |||||| ||||||| |||| ||||||||||||||||||||||| |||||||| |||          |||||||||||||||||||    
T  8874196 tttttgtaacagagtttgacgagagggacaaaaagcaaaaagttattaacttacaggggttgttttagaac-aaaaaaatatacagggacgaaaaccaaa 8874294  T
Q  678 aacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||| | ||||| ||||| |||||||| ||||||||    
T  8874295 aacaggtcaaattacagggacgatttacatatttaa 8874330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 39101855 - 39101786
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  39101855 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacatacaggggttgtttta 39101786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 575 - 713
Target Start/End: Complemental strand, 8872659 - 8872523
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||| ||  |||||||| |||||||||| ||||||||||||||||||  ||| |||||||| |||          |||||| |||||||||    
T  8872659 gcgtttttgtaacagagtttgacggg-gggacgaaaagcaaaaagttattaacttatgggggttgttttagaacaaaaaaaga-tacaggaacgaaaacc 8872562  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||| ||||| |||| ||| ||||||||    
T  8872561 aaaaacacgccaaattacagggacgaattacatatttaa 8872523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 644
Target Start/End: Complemental strand, 17552108 - 17552041
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaa-atcaaaaagttattaacttacagggattgtttta 644  Q
    ||||| |||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  17552108 tttttttaacagaagttgacgagagggacgaaatatcaaaaagttattaacttgcagggattgtttta 17552041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 578 - 644
Target Start/End: Original strand, 38626092 - 38626158
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||||||| ||||||||    
T  38626092 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgtttta 38626158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 578 - 647
Target Start/End: Complemental strand, 11771335 - 11771266
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaa 647  Q
    ||||| |||| ||||||||| | |||||||||| |||||||||||| ||||||||||| |||||||||||    
T  11771335 tttttttaacagaagttgacagtagggacgaaattcaaaaagttatcaacttacagggtttgttttaaaa 11771266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 25916104 - 25916145
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcag 541  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25916104 tccctctcactgtgtgactcatcaataagtttgccacgtcag 25916145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 713
Target Start/End: Original strand, 39103330 - 39103467
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||  ||  ||||||||||||||||||  |||||||||||||||||| | || |||||||| |||          ||| || |||||||||    
T  39103330 gcgtttttgtaatagagtttgacgggagggacgaaacgcaaaaagttattaacttatacgggttgttttagaac-aaaaaaagatactggaacgaaaacc 39103428  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||| ||| | |||||||| ||||||||    
T  39103429 aaaaacacgccaaattacaaggacgatttacatatttaa 39103467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 36621145 - 36621214
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||  |||| || ||||||||    
T  36621145 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaatgtacaagggttgtttta 36621214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 713
Target Start/End: Complemental strand, 16308622 - 16308568
Alignment:
Q  659 tacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||||||||||||||||||| || | ||||| |||||||| ||||||||    
T  16308622 tacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaa 16308568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 1841106 - 1841386
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnntcattctttaggtttttcaatttgagaattttgtgaattttttcaatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1841106 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaa-tcattctttaggtttttcaatttgagaattttgtgaattgtttcaatat 1841204  T
Q  115 tgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841205 tgggaattcgagcattcacaatgaggattttgttgttataattttattttgatattatcaataaaagtttagttgggactatgaacattgtggattttag 1841304  T
Q  215 tgttgagatgtcaatctgaccattgtcaatgggaattttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1841305 tgttgagatgttaatctgaccattgtcaatggggattttgtttaggtttgtgagaagttgtctattgagagtgagatgatga 1841386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 13947962 - 13947751
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13947962 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 13947863  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| |||          |||| |||||||||||||||||||||||||| ||||| |||    
T  13947862 gagggacgaaaatcaaaaagttattaacttataggggttgttttagaac-aaaaaaagataca-ggacgaaaaccaaaaacacgccaaattacagggacg 13947765  T
Q  700 atttaaatatttaa 713  Q
    ||||| ||||||||    
T  13947764 atttacatatttaa 13947751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 500 - 713
Target Start/End: Original strand, 1841596 - 1841811
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcac---tgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttga 596  Q
    ||||||||||||||||||||||||||||||||||||||||||   |   |||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  1841596 tccctctcactgtgtgactcatcaataagtttgccacgtcagcatcgtttgccacgtcatccttcgtttgccacatgtgcgtttttgtaacggaagttga 1841695  T
Q  597 cgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggt 696  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| |||          ||||||||| |||||||||||||||||||||  ||||     
T  1841696 cgggagggacgaaaataaaaaagttattaacttacaggggttgttttagaac-aaaaaaagatacagggacaaaaaccaaaaacacgccaaatttcaggg 1841794  T
Q  697 acgatttaaatatttaa 713  Q
    |||||||| ||||||||    
T  1841795 acgatttacatatttaa 1841811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 531 - 713
Target Start/End: Complemental strand, 14089120 - 14088940
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14089120 tgccacgtcaggcactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 14089021  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||| |||||||| |||          |||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  14089020 taggggttgttttagaac-aaaaaaagataca-ggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 14088940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 531 - 713
Target Start/End: Complemental strand, 1840341 - 1840160
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1840341 tgccacgtcaggcactaccacgtcatcctctgtttgccacatgtgtgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 1840242  T
Q  631 cagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
     |||| |||||||| |||          |||| | || ||||||||||||||||||||| ||||| |||||||| ||||||||    
T  1840241 taggggttgttttagaac-aaaaaaagatacaagaacaaaaaccaaaaacacgccaaattacagggacgatttacatatttaa 1840160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 532 - 635
Target Start/End: Original strand, 13948471 - 13948578
Alignment:
Q  532 gccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttt----tgtaacggaagttgacgggagggacgaaaatcaaaaagttattaac 627  Q
    ||||| |||||||||||||| |||||||| ||||| ||||||||||||||    |||||||||||||||| |||||||||||||| ||||||||||||||    
T  13948471 gccacatcaggcactgccacgtcatcctctgtttgtcacatgtgcgttttaatttgtaacggaagttgacaggagggacgaaaataaaaaagttattaac 13948570  T
Q  628 ttacaggg 635  Q
    ||||||||    
T  13948571 ttacaggg 13948578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 532 - 635
Target Start/End: Original strand, 14089678 - 14089785
Alignment:
Q  532 gccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttt----tgtaacggaagttgacgggagggacgaaaatcaaaaagttattaac 627  Q
    ||||| |||||||||||||| |||||||| ||||| ||||||||||||||    |||||||||||||||| |||||||||||||| ||||||||||||||    
T  14089678 gccacatcaggcactgccacgtcatcctctgtttgtcacatgtgcgttttaatttgtaacggaagttgacaggagggacgaaaataaaaaagttattaac 14089777  T
Q  628 ttacaggg 635  Q
    ||||||||    
T  14089778 ttacaggg 14089785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 45499445 - 45499376
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45499445 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgtttta 45499376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 40303433 - 40303364
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  40303433 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgtttta 40303364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 1841442 - 1841502
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaa 408  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1841442 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaa 1841502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 13948268 - 13948332
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  13948268 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggagggaagaagatgaagaaagcta 13948332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 14089475 - 14089539
Alignment:
Q  348 gatgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  14089475 gatgaatttatgaagacaatgatgaagatgtaaaagaggtggagggaagaagatgaagaaagcta 14089539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 578 - 713
Target Start/End: Complemental strand, 28563513 - 28563379
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaa 677  Q
    |||||||||| ||  ||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||           |||| ||||||||||||||    
T  28563513 tttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttataggggttgttttagaa-gaaaaaaagatacaaggacgaaaaccaaa 28563415  T
Q  678 aacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||||| ||||| |||||||| ||||||||    
T  28563414 aacacgccaaattacagggacgatttacatatttaa 28563379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 13948172 - 13948217
Alignment:
Q  251 tttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13948172 tttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 13948217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 14089379 - 14089424
Alignment:
Q  251 tttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14089379 tttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 14089424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 578 - 713
Target Start/End: Original strand, 40304684 - 40304818
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaa 677  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||| |||          |||||||||||||||||||    
T  40304684 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac-aaaaaaagatacagggacgaaaaccaaa 40304782  T
Q  678 aacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||| || | ||||| ||  |||| ||||||||    
T  40304783 aacacgcgaacttacagggaccttttacatatttaa 40304818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 578 - 713
Target Start/End: Original strand, 45492954 - 45493088
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaa 677  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||| |||          |||||||||||||||||||    
T  45492954 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac-aaaaaaagatacagggacgaaaaccaaa 45493052  T
Q  678 aacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||| || | ||||| ||  |||| ||||||||    
T  45493053 aacacgcgaatttacagggaccttttacatatttaa 45493088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 578 - 713
Target Start/End: Original strand, 45500696 - 45500830
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaa 677  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||| |||          |||||||||||||||||||    
T  45500696 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaac-aaaaaaagatacagggacgaaaaccaaa 45500794  T
Q  678 aacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||| || | ||||| ||  |||| ||||||||    
T  45500795 aacacgcgaatttacagggaccttttacatatttaa 45500830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 13948421 - 13948462
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcag 541  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13948421 tccctctcactgtgtgactcatcaataagtttgccacgtcag 13948462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 14089169 - 14089128
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcag 541  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14089169 tccctctcactgtgtgactcatcaataagtttgccacgtcag 14089128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 14089628 - 14089669
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcag 541  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14089628 tccctctcactgtgtgactcatcaataagtttgccacgtcag 14089669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 538
Target Start/End: Complemental strand, 1840390 - 1840352
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgt 538  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1840390 tccctctcactgtgtgactcatcaataagtttgccacgt 1840352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 575 - 644
Target Start/End: Complemental strand, 16142366 - 16142297
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||| || | ||||||||||| |||||||||||| |||  |||||||||||| ||||||||    
T  16142366 gcgtttttgtaacagatgctgacgggagggccgaaaatcaaaacgtttgtaacttacagggtttgtttta 16142297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 575 - 647
Target Start/End: Complemental strand, 44095495 - 44095423
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaa 647  Q
    |||||||||||||||||||| |||  |||||| |||| ||||| ||||  ||||||||||| |||||||||||    
T  44095495 gcgtttttgtaacggaagttaacgttagggactaaaaccaaaaggttaacaacttacagggtttgttttaaaa 44095423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 529 - 644
Target Start/End: Original strand, 16143469 - 16143584
Alignment:
Q  529 tttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaact 628  Q
    ||||||||||||  || |||||| ||| || ||||| | |||||  |||||||| |||| |||||| |||  |||||| |||| ||||||||||  ||||    
T  16143469 tttgccacgtcaaacaatgccacgtcagccaccgttagacacatcagcgtttttttaacagaagttaacgttagggactaaaaccaaaaagttaacaact 16143568  T
Q  629 tacagggattgtttta 644  Q
    ||||||| ||||||||    
T  16143569 tacagggtttgtttta 16143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 13948138 - 13948173
Alignment:
Q  168 attatcaataaaagtttagttgggactatgaacatt 203  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13948138 attatcaataaaaatttagttgggactatgaacatt 13948173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 14089345 - 14089380
Alignment:
Q  168 attatcaataaaagtttagttgggactatgaacatt 203  Q
    ||||||||||||| ||||||||||||||||||||||    
T  14089345 attatcaataaaaatttagttgggactatgaacatt 14089380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 644
Target Start/End: Original strand, 38729983 - 38730050
Alignment:
Q  577 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||| || | | |||| ||||||||||||||||| |||  |||||||||||| ||||||||    
T  38729983 gtttttgtaacagaggctaacggcagggacgaaaatcaaaaggtttgtaacttacagggtttgtttta 38730050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 594 - 644
Target Start/End: Complemental strand, 38728305 - 38728255
Alignment:
Q  594 tgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    |||||||||||||||||||||||| |||  |||||| ||||| ||||||||    
T  38728305 tgacgggagggacgaaaatcaaaacgtttgtaacttgcagggtttgtttta 38728255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 644
Target Start/End: Original strand, 44097270 - 44097339
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||| |||||| |||  |||||| |||| ||||| ||||  ||||||||||| ||||||||    
T  44097270 gcgtttttgtaacagaagttaacgttagggactaaaaccaaaaggttaacaacttacagggtttgtttta 44097339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 1e-86; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 19083512 - 19083725
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnn-tcattctttaggtttttcaatttgagaattttgtgaattttttcaata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19083512 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaata 19083611  T
Q  114 ttgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttagttgggactatgaacattgtggatttta 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  19083612 ttgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaagtttatttatgactatgaacattgtggatttta 19083711  T
Q  214 gtgttgagatgtca 227  Q
    |||||||| |||||    
T  19083712 gtgttgagttgtca 19083725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 500 - 644
Target Start/End: Complemental strand, 19082881 - 19082737
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19082881 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 19082782  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgtttta 644  Q
    ||||||||||||||||||||||||||||||| | || ||||||||    
T  19082781 gagggacgaaaatcaaaaagttattaacttatatgggttgtttta 19082737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 500 - 713
Target Start/End: Original strand, 19083964 - 19084176
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||| ||| ||||||||| ||||||||||||||||| |||||||||||||||||||    
T  19083964 tccctctcactgtgtgactcatcaataagtttgtcatgtcaagcactgtcacgtcatcctccatttgccacatgtgcgttattgtaacggaagttgacgg 19084063  T
Q  600 gagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacg 699  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| |||          ||||||||| |||||||||||||||| |||| ||||| |||    
T  19084064 gagggacgaaaatcaaaaagttattaacatacaggggttgttttagaac-aaaaaaagatacagggacaaaaaccaaaaacacgctaaattacagggacg 19084162  T
Q  700 atttaaatatttaa 713  Q
     |||| ||||||||    
T  19084163 gtttacatatttaa 19084176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 575 - 713
Target Start/End: Complemental strand, 8745572 - 8745435
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||          || |||||||||||||    
T  8745572 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggggttgttttagaac-aaaaaaagatatagggacgaaaacc 8745474  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||||||||| ||||| |||||||| ||||||||    
T  8745473 aaaaacacgccaaattacagggacgatttacatatttaa 8745435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 575 - 713
Target Start/End: Original strand, 1258358 - 1258496
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagtt-attaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaac 673  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||| |||||| || |||| |||||||| |||          |||||||||||||||    
T  1258358 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagtttattaacctataggggttgttttagaacaaaaaaaga-tacagggacgaaaac 1258456  T
Q  674 caaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||||||||| ||||| |||||||| ||||||||    
T  1258457 caaaaacacgccaaattacagggacgatttacatatttaa 1258496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 576 - 713
Target Start/End: Original strand, 8752720 - 8752856
Alignment:
Q  576 cgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacca 675  Q
    ||||||||||||  |  ||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||          |||||||||||||||||    
T  8752720 cgtttttgtaacaaagtttgacgggagggacgaaaagcaaaaggttattaacttgcaggggttgttttagaacaaaaaaaga-tacagggacgaaaacca 8752818  T
Q  676 aaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||||||| ||||  |||||||| ||||||||    
T  8752819 aaaacacgccaaattacagagacgatttacatatttaa 8752856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 578 - 713
Target Start/End: Complemental strand, 1256851 - 1256717
Alignment:
Q  578 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaa 677  Q
    |||||||||| ||  |||||||||||||||||||  ||||||||||||||||| |||| |||||||| ||           |||||||||||||||||||    
T  1256851 tttttgtaacagagtttgacgggagggacgaaaagtaaaaagttattaacttataggggttgttttagaa-taaaaaaagatacagggacgaaaaccaaa 1256753  T
Q  678 aacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||||||||||| ||| | |||||||| ||||||||    
T  1256752 aacacgccaaattacaaggacgatttacatatttaa 1256717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 531 - 636
Target Start/End: Original strand, 7678518 - 7678623
Alignment:
Q  531 tgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 630  Q
    |||||||||||  |||||||||||||| |||||| ||||| |||  ||||||||||| |||| | |||||||||||||||| ||||| ||||  ||||||    
T  7678518 tgccacgtcagctactgccacatcatcatccgttagccacgtgtatgtttttgtaacagaagctaacgggagggacgaaaagcaaaacgttaacaactta 7678617  T
Q  631 caggga 636  Q
    ||||||    
T  7678618 caggga 7678623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 575 - 713
Target Start/End: Original strand, 2956154 - 2956291
Alignment:
Q  575 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaacc 674  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||| ||  |||||||| |||          |||| |||||||||||    
T  2956154 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggagttgttttagaac-aaaaaaagatacaaggacgaaaacc 2956252  T
Q  675 aaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    ||||||||  ||||| ||||| |||||||| ||||||||    
T  2956253 aaaaacacatcaaattacagggacgatttacatatttaa 2956291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 19083725 - 19083772
Alignment:
Q  249 attttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  19083725 attttgattgggtttgtgagaagttgtctattgagagtgagatgatga 19083772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 19083831 - 19083875
Alignment:
Q  368 gatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  19083831 gatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 19083875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 659 - 713
Target Start/End: Original strand, 7678649 - 7678703
Alignment:
Q  659 tacagggacgaaaaccaaaaacacgccaaataacaggtacgatttaaatatttaa 713  Q
    |||| |||| |||| |||||||||||||||| ||||| |||||||| ||||||||    
T  7678649 tacaaggacaaaaagcaaaaacacgccaaattacagggacgatttacatatttaa 7678703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 145; Significance: 7e-76; HSPs: 5)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 6251 - 6468
Alignment:
Q  15 agcagagatgcgagatcaatgatgagacgagagttggtaatgnnnnnnnnn---tcattctttaggtttttcaatttgagaattttgtgaattttttcaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||    
T  6251 agcagagatgcgagatcaatgatgagacgagagttggtaatgaaaaaaaaaaaatcattctttaggtttttcaatttgagaattttgtgaattttttcaa 6350  T
Q  112 tattgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaa-gtttagttgg-gactatgaacattgtggat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||   |||||||||||||||||||    
T  6351 tattgggaattcgagcattcacaatgaggattttgttgttataatttgattttgatattatcaataaaaagtttaatttatgactatgaacattgtggat 6450  T
Q  210 tttagtgttgagatgtca 227  Q
    |||||||||||| |||||    
T  6451 tttagtgttgagttgtca 6468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 504 - 713
Target Start/End: Original strand, 6663 - 6871
Alignment:
Q  504 tctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagg 603  Q
    ||||||||||||||||||||||||||||| || |||| |||||| ||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  6663 tctcactgtgtgactcatcaataagtttgtcatgtcaagcactgtcacgtcatcctccatttgccacatgtgcgttattgtaacggaagttgacgggagg 6762  T
Q  604 gacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataacaggtacgattt 703  Q
    |  ||||||||||||||||||||| |||||||  | ||||| |||          |||||| || ||||||||||||||||||||| ||||  |||||||    
T  6763 gtagaaaatcaaaaagttattaacatacaggggatattttagaac-aaaaaaagatacaggaacaaaaaccaaaaacacgccaaattacagagacgattt 6861  T
Q  704 aaatatttaa 713  Q
    | ||||||||    
T  6862 acatatttaa 6871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 500 - 713
Target Start/End: Complemental strand, 5581 - 5378
Alignment:
Q  500 tccctctcactgtgtgactcatcaataagtttgccacgtcaggcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgg 599  Q
    ||||||||||||||||||||||||||||||||||||||               |||||||||||||| ||||||||||||||||||||||||||||||||    
T  5581 tccctctcactgtgtgactcatcaataagtttgccacg---------------tcatcctccgtttgtcacatgtgcgtttttgtaacggaagttgacgg 5497  T
Q  600 gagggacgaaaat-caaaaagtt-attaacttacagggattgttttaaaacnnnnnnnnnnt-acagggacgaaaaccaaaaa--cacgccaaataacag 694  Q
    |||||||||||||  |||||||| ||||||||| |||| |||||||| |||          | ||||||||||||||||||||   ||||||||| ||||    
T  5496 gagggacgaaaataaaaaaagttaattaacttataggggttgttttagaacaaaaaaaagttaacagggacgaaaaccaaaaaacaacgccaaattacag 5397  T
Q  695 gtacgatttaaatatttaa 713  Q
    | |||||||| ||||||||    
T  5396 ggacgatttacatatttaa 5378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 349 - 412
Target Start/End: Original strand, 6569 - 6632
Alignment:
Q  349 atgaatttatgaagacaatgatgaagatgtcaaagaggtggaaggaagaagatgaagaaagcta 412  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6569 atgaatttatgaagacaatgatgaagatgtaaaagaggtggaaggaagaagatgaagaaagcta 6632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 6468 - 6515
Alignment:
Q  249 attttgtttgggtttgtgagaagttgtctattgagagtgagatgatga 296  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  6468 attttgattgggtttgtgagaagttgtctattgagagtgagatgatga 6515  T

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Target: scaffold0633 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 593 - 713
Target Start/End: Original strand, 6831 - 6950
Alignment:
Q  593 ttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacnnnnnnnnnntacagggacgaaaaccaaaaacacgccaaataac 692  Q
    |||||||||| |||||||| ||||||||||||||||||||| | |||||||| |||          ||||| ||||||||||||||||||||||||| ||    
T  6831 ttgacgggagagacgaaaagcaaaaagttattaacttacagaggttgttttagaac-aaaaaaatatacagagacgaaaaccaaaaacacgccaaattac 6929  T
Q  693 aggtacgatttaaatatttaa 713  Q
    ||  |||||||| ||||||||    
T  6930 agagacgatttacatatttaa 6950  T

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