View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_high_10 (Length: 311)
Name: NF11589_high_10
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 5 - 298
Target Start/End: Original strand, 19500196 - 19500492
Alignment:
| Q |
5 |
tgttgtcttggaggtggatgatggatcgtgttaaaatgcccatcagtttgttttatggctgattaaatagaaattcatgctaagttgcatgaggcagcca |
104 |
Q |
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| T |
19500196 |
tgttgtcttagaggtggatgatggatcatgttaaaatgcccgtcagtttgttttatggctgatcaaatagaaattcatgctaagttgcatgaggcagcca |
19500295 |
T |
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| Q |
105 |
atcaagccataattatgcactgaacctaactttgtttttacatagccatgagtctattatatgattatgagctgaataaaatgtgtcagcaggttccaca |
204 |
Q |
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| T |
19500296 |
atcaagccataattatgcacggaacctaactttgtttttacatagccatgagtctattaaatgattatgagctgaataaaatgtgtcagcaggttccaca |
19500395 |
T |
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| Q |
205 |
aaaaccaaaactcaaaatagtagtatatgctacataatataattagcaaaccc---atataattaaaaaatagatcattctctgcatcttcgtgttc |
298 |
Q |
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| T |
19500396 |
aaaaccaaaactcaaaatagtagtatatgctacataataaaattagcaaacccataatataattaaaaaatagatcattctctgcatcttcgtgttc |
19500492 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 8750470 - 8750504
Alignment:
| Q |
7 |
ttgtcttggaggtggatgatggatcgtgttaaaat |
41 |
Q |
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| T |
8750470 |
ttgtcttggaggtggatgatggatcgtgttaaaat |
8750504 |
T |
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Back To:
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 36253984 - 36254040
Alignment:
| Q |
5 |
tgttgtcttggaggtggatgatggatcgtgttaaaatgcccatcagtttgttttatg |
61 |
Q |
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| T |
36253984 |
tgttgtcttggaggtggatgatggatcaggttaaaagtccggtcagtttgttttatg |
36254040 |
T |
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