View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11589_high_13 (Length: 291)

Name: NF11589_high_13
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11589_high_13
NF11589_high_13
[»] chr3 (1 HSPs)
chr3 (10-291)||(25423640-25423923)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 25423640 - 25423923
Alignment:
Q  10 aggagcacagaagacaatttcgaaaaaagcggattccctgcaatgaaattcattcaggcgtcaaaactcatgagtaactaccaatacaagcacaataatc 109  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25423640 aggatcactgaagacaatttcgaaaaaagcggattccctgcaatgaaattcattcaggcgtcaaaacttatgagtaactaccaatacaagcacaataatc 25423739  T
Q  110 taaggtagtataaaaatcaaatgatacagtggctcaagggaatgaaaaattacctgcaacgcaaaagtaatatcaccttcatctagttttggtgtcactc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25423740 taaggtagtataaaaatcaaatgatacagtggctcaagggaatgaaaaattacctgcaacgcaaaagtaatatcaccttcatctagttttggtgtcactc 25423839  T
Q  210 ttctcaatttatcatctcgggattgtcctagtttaataaggccctgcagtaataatttatg--tatcattatattactgttcac 291  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  25423840 ttctcaatttatcatctctggattgtcctagtttaataaggccctgcagtaataatttatgtatatcattatattactgatcac 25423923  T

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