View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_high_15 (Length: 288)
Name: NF11589_high_15
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_high_15 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 4590250 - 4589963
Alignment:
| Q |
1 |
ataactgacaaggcaacatctctgttatttcactaagattttcctcgttactgttatattatcagaaatctgggctgaaaatctttaaaccaacacgaaa |
100 |
Q |
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| T |
4590250 |
ataactgacaaggcaacatctttgttatttcactaagattttcctcgttactgctatattatcagaaatctgggctgaaaatctttaaaccaacacgaaa |
4590151 |
T |
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| Q |
101 |
aattgttgcttaggtaaaaattagacgactctcgaattctcactggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgc |
200 |
Q |
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| T |
4590150 |
agttgttgcttaggtaaaaattagacgactctcgaattctccctggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgc |
4590051 |
T |
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| Q |
201 |
tatgattggtaaattactaaaataggttgcaacaataacaaaacctacgtcaaattctcaaccgccaaacatagtatcatttcctcct |
288 |
Q |
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| T |
4590050 |
tatgattggtaaattactaaaataggttgcaacaataacaaaacctacgtcaaattctcaaccgccaaccatagtatcattccctcct |
4589963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 4604128 - 4603991
Alignment:
| Q |
1 |
ataactgacaaggcaacatctctgttatttcactaagattttcctcgttactgttatattatcagaaatctgggctgaaaatctttaaaccaacacgaaa |
100 |
Q |
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||||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||| ||| |
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| T |
4604128 |
ataactgacgaggcaacatctttgttatttcactaagaatttcctcgttactgctat--tatcagaaatttgggctgaaaatctttaaaccttcacaaaa |
4604031 |
T |
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| Q |
101 |
aattgttgcttaggtaaaaattagacgactctcgaattct |
140 |
Q |
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| T |
4604030 |
agttgttgtttagggaaaaactagacgattctcgaattct |
4603991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 125 - 259
Target Start/End: Complemental strand, 4603770 - 4603637
Alignment:
| Q |
125 |
acgactctcgaattctcactggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgctatgattggtaaattactaaaata |
224 |
Q |
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|||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||| |
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| T |
4603770 |
acgattctcgaattctcactgacctgtcgacaaattaaaaacaagtaaagcattcaggatagtaatttaattctgctatgattggtaaaatactaaaata |
4603671 |
T |
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| Q |
225 |
ggttgcaacaataacaaaacctacgtcaaattctc |
259 |
Q |
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|||| || ||||||| | |||| ||||||||||| |
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| T |
4603670 |
-gttggaaaaataacagagcctatgtcaaattctc |
4603637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 595643 - 595552
Alignment:
| Q |
122 |
tagacgactctcgaattctcactggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgctatgattggtaaa |
213 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||| |||| |||||| ||| ||||| ||| |||| |||||||||||||||| |
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| T |
595643 |
tagacgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcaatcaagacagtaatccatttttgctatgattggtaaa |
595552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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