View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11589_high_18 (Length: 250)

Name: NF11589_high_18
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11589_high_18
NF11589_high_18
[»] chr8 (8 HSPs)
chr8 (127-247)||(12283115-12283235)
chr8 (127-247)||(12267389-12267512)
chr8 (1-85)||(12283277-12283361)
chr8 (131-227)||(12257318-12257414)
chr8 (131-227)||(12264710-12264806)
chr8 (127-227)||(12271319-12271419)
chr8 (131-207)||(12288005-12288081)
chr8 (1-42)||(12267677-12267718)
[»] chr3 (1 HSPs)
chr3 (129-207)||(29198061-29198139)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 12283235 - 12283115
Alignment:
Q  127 gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttcca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12283235 gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttcca 12283136  T
Q  227 tgcatcaccctttgcttctcc 247  Q
    ||||||||| |||||||||||    
T  12283135 tgcatcaccgtttgcttctcc 12283115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 12267512 - 12267389
Alignment:
Q  127 gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaac---atccattccagttaaccggccaccacaattcttt 223  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  12267512 gttagggtaattccatcaaaagggaaaaccaatagcaacaccattagagttcttgacaccaacaatatccattccagttaaccggccaccacaattcttt 12267413  T
Q  224 ccatgcatcaccctttgcttctcc 247  Q
    |||||||||||| |||||||||||    
T  12267412 ccatgcatcaccgtttgcttctcc 12267389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 12283361 - 12283277
Alignment:
Q  1 aattaaaacttgagaaatgaaatagtacaatagtattgtatgcccccattcaaaaattgacttcatcaatctttgacaagcatgc 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12283361 aattaaaacttgagaaatgaaatagtacaatagtattgtatgcccccattcaaaaattgactttatcaatctttgacaagcatgc 12283277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 12257414 - 12257318
Alignment:
Q  131 gggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttccat 227  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||| ||||  |||||||||||||||||||||||| |||||| ||||||||||||    
T  12257414 gggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattctttccat 12257318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 12264806 - 12264710
Alignment:
Q  131 gggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttccat 227  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||| ||||  |||||||||||||||||||||||| |||||| ||||||||||||    
T  12264806 gggtaattccaccaaaacggaataccaatagcaacaccattagagtccttggtaccaacatccattccagttaaccgaccaccataattctttccat 12264710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 12271419 - 12271319
Alignment:
Q  127 gttagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccggccaccacaattctttcca 226  Q
    ||||||||||||||||||||  |||| ||||||| || |||||||| |||||||   ||||||||| ||||||||||||||| ||||| || ||||||||    
T  12271419 gttagggtaattccaccaaacaggaataccaataacagcaccattagagttcttcgtaccaacatcaattccagttaaccggtcaccataactctttcca 12271320  T
Q  227 t 227  Q
    |    
T  12271319 t 12271319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 12288081 - 12288005
Alignment:
Q  131 gggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccg 207  Q
    ||||||||||||| ||| |||| ||||||| || | |||||| ||||||||  ||||||||| ||||||||||||||    
T  12288081 gggtaattccacctaaaaggaataccaataacacctccattagagttcttggtaccaacatcaattccagttaaccg 12288005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12267718 - 12267677
Alignment:
Q  1 aattaaaacttgagaaatgaaatagtacaatagtattgtatg 42  Q
    |||||||||||||||||||||||||||||| |||||| ||||    
T  12267718 aattaaaacttgagaaatgaaatagtacaacagtattctatg 12267677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 29198139 - 29198061
Alignment:
Q  129 tagggtaattccaccaaaagggaaaaccaatagcaacaccattacagttcttgacaccaacatccattccagttaaccg 207  Q
    ||||||||||||||||||  |||| ||||||| |||||| |||| ||||||||  ||||||||| ||||||||||||||    
T  29198139 tagggtaattccaccaaacaggaataccaataacaacactattagagttcttggtaccaacatcaattccagttaaccg 29198061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University