View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_high_26 (Length: 235)
Name: NF11589_high_26
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 39771287 - 39771489
Alignment:
| Q |
8 |
gagtgagatgaagggttcctttttgtgttcaccattcctcatgttaatgcttacaaactcaaattcaagctccttttcatacagagtggcagtaacccgc |
107 |
Q |
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| T |
39771287 |
gagtgatatgaagggttcctttttgtgttcaccattcctcatgttaatgcttacaaactcaaattcaagctccttttcatacaaagttgcagtaacccgc |
39771386 |
T |
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| Q |
108 |
atggtggccgttgagatagggtttccgtgcacttttattgttgccatgattttgcagatatgtatgtagtagtagtactatggtgtatagctcttaattt |
207 |
Q |
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| T |
39771387 |
atggtggccgttgagatagggcttccgtgcacttttattgttgccatgattttgcagatatgtatgtag---------tatggtgtatagctcttaattt |
39771477 |
T |
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| Q |
208 |
actatggtattt |
219 |
Q |
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|||||||||||| |
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| T |
39771478 |
actatggtattt |
39771489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 39756516 - 39756667
Alignment:
| Q |
8 |
gagtgagatgaagggttcctttttgtgttcaccattcctcatgttaatgcttacaaactcaaattcaagctccttttcatacagagtggcagtaacccgc |
107 |
Q |
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| T |
39756516 |
gagtgatatgaacggttcctttttgtgttctccattcctcatgttaatgttaaaaaactcaaactcaatctgcttttcatacagagttgcagtaacccgc |
39756615 |
T |
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| Q |
108 |
atggtggccgttgagataggg-tttccgtgcacttttattgttgccatgattt |
159 |
Q |
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| T |
39756616 |
atggtggccgttgag-tagggacttccatggacttttattgttgccatgattt |
39756667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 39761870 - 39762021
Alignment:
| Q |
8 |
gagtgagatgaagggttcctttttgtgttcaccattcctcatgttaatgcttacaaactcaaattcaagctccttttcatacagagtggcagtaacccgc |
107 |
Q |
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|||||| ||||| ||||||||||||||||| |||||||||||||||||| | | ||||||||| |||| || ||||||||||||||| |||||||||||| |
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| T |
39761870 |
gagtgatatgaacggttcctttttgtgttctccattcctcatgttaatgttaaaaaactcaaactcaatctgcttttcatacagagttgcagtaacccgc |
39761969 |
T |
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| Q |
108 |
atggtggccgttgagataggg-tttccgtgcacttttattgttgccatgattt |
159 |
Q |
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||||||||||||||| ||||| |||| || |||||||||||||||||||||| |
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| T |
39761970 |
atggtggccgttgag-tagggacttccatggacttttattgttgccatgattt |
39762021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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