View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_high_5 (Length: 436)
Name: NF11589_high_5
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 5105883 - 5105472
Alignment:
| Q |
11 |
cacagaacttggtgatttgttgggtgagaaatacattaaagaaagttacaaagcagtggcagaagaatcagcttacttgtatcagaagcaagcttggttg |
110 |
Q |
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| T |
5105883 |
cacagaacttggtgatttgttgggtgagaaatacattaaagaaagttacaaagcagtggcagaagaatcagcttacttgtatcagaagcaagcttggttg |
5105784 |
T |
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| Q |
111 |
gttttggtgaagattttagatcaagatgatgat---ataaaggaacaaaaacaaggcaaggaaaaaagcattggaaggttggtgaatgaaaagattgaga |
207 |
Q |
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| T |
5105783 |
gttttggtgaagattttagatcaagatgatgatgatataaaagaacaaaaacaaggcaaggaaaaaagcattggaaggttggtgaatgaaaagattgaga |
5105684 |
T |
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| Q |
208 |
cattttttaagtgtttgagtgagatttgtgacaggcataggagtttttatagtatacctgatgttgatttgagggaacaaatgagggattcaacagtgaa |
307 |
Q |
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| T |
5105683 |
catttttcaagtgtttgagtgagatttgtgacaggcataggagtttttatagtatacctgatgttgatttgagggaacaaatgagggattcaacagtgaa |
5105584 |
T |
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| Q |
308 |
acttgttgtgccagtttatgctgagtttttagagtcttattcaggatttttgcaaaggaaagtttatcctagtcctcaaaggttgcaagggttgcttggg |
407 |
Q |
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| T |
5105583 |
acttcttgtgccagtttatgctgagtttttagagtcttattcaggatttttgcaaaggaaagtttatcctagtcctcaaaggttgcaagggttgcttggg |
5105484 |
T |
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| Q |
408 |
aaggcttttggt |
419 |
Q |
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| T |
5105483 |
aaggcttttggt |
5105472 |
T |
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