View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_high_7 (Length: 404)
Name: NF11589_high_7
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Complemental strand, 36523269 - 36522886
Alignment:
| Q |
16 |
acttatatcctttctgctggtttagatgctggagttgcctttataggtttactactttatttttctcttcaatcttatggtatttatggtccaacttggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523269 |
acttatatcctttctgctggtttagatgctggagttgcctttataggtttactactttatttttctcttcaatcttatggtatttatggtccaacttggt |
36523170 |
T |
|
| Q |
116 |
ggggtcttgaagcagatcattgccctttagctagatgtcctacatctccaggtgtacatgcagagggttgtcatgttctttgacttccatgtaaccattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523169 |
ggggtcttgaagcagatcattgccctttagctagatgtcctacatctccaggtgtacatgcagagggttgtcatgttctttgacttccatgtaaccattc |
36523070 |
T |
|
| Q |
216 |
catcgccaatattccaataatgccaagttagtatgacattggacatgtaaatatagaaaactaagaacctgttttattttgatctccttgtgtttaaact |
315 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523069 |
catcgccaatagtccaataatgccgagttagtatgacattggacatgtaaatatagaaaactaagaacctgttttattttgatctccttgtgtttaaact |
36522970 |
T |
|
| Q |
316 |
aacttctttgatttttcagtatttttataatgtaatttgtaagagtctcaaggaaaaggagccaagtatgccattttctctgct |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36522969 |
aacttctttgatttttcagtatttttataatgtaatttgtaagagtctcaaggaaaaggagccaagtatgccattttctttgct |
36522886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 36530102 - 36529899
Alignment:
| Q |
16 |
acttatatcctttctgctggtttagatgctggagttgcctttataggtttactactttatttttctcttcaatcttatggtatttatggtccaacttggt |
115 |
Q |
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|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36530102 |
acttacatcctttcagctggtttagatgctggagttgcctttataggtttactactttatttttctcttcaatcttacggtatttatggtccaacttggt |
36530003 |
T |
|
| Q |
116 |
ggggtcttgaagcagatcattgccctttagctagatgtcctacatctccaggtgtacatgcagagggttgtcatgttctttgacttccatgtaaccattc |
215 |
Q |
| |
|
||||||||||| |||| || |||||||| |||| ||| |||||| ||||||||||||||||||||||||||| ||||| ||||| | |||| ||||||| |
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| T |
36530002 |
ggggtcttgaaccagaccactgccctttggctaaatgccctacagctccaggtgtacatgcagagggttgtcctgttccctgactacaatgttaccattc |
36529903 |
T |
|
| Q |
216 |
catc |
219 |
Q |
| |
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|||| |
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|
| T |
36529902 |
catc |
36529899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 36535714 - 36535502
Alignment:
| Q |
16 |
acttatatcctttctgctggtttagatgctggagttgcctttataggtttactactttatttttctcttcaatcttatggtatttatggtccaacttggt |
115 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| |||||||||| ||||||||| |||| |
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|
| T |
36535714 |
acttatattctctcagctggtttagatgctggagttgcttttatgggtttagtactttatttttctcttcaatcctatggtatttttggtccaacatggt |
36535615 |
T |
|
| Q |
116 |
ggggtcttgaagcagatcattgccctttagctagatgtcctacatctccaggtgtacatgcagagggttgtcatgttctttgacttccatgtaaccattc |
215 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||| | || |||||||||| ||||| ||||||||||| | ||||| |
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| T |
36535614 |
ggggccttgaagcagatcactgccctttggctagatgtcctacagctccaggtgtatacgctgagggttgtcctgttccctgacttccatgataacattc |
36535515 |
T |
|
| Q |
216 |
catcgccaatatt |
228 |
Q |
| |
|
|||| ||||||| |
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|
| T |
36535514 |
catcagcaatatt |
36535502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 36529870 - 36529831
Alignment:
| Q |
256 |
ggacatgtaaatatagaaaactaagaacctgttttatttt |
295 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||| |
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| T |
36529870 |
ggacatgtaaatgtacaaaactaagaacctgttttatttt |
36529831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 42060176 - 42060235
Alignment:
| Q |
73 |
tatttttctcttcaatcttatggtatttatggtccaacttggtggggtcttgaagcagat |
132 |
Q |
| |
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|||||||| ||||||||||||| | | | |||||||||||||||||||||||| |||||| |
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| T |
42060176 |
tatttttcacttcaatcttatgatgtctttggtccaacttggtggggtcttgaggcagat |
42060235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 42075482 - 42075523
Alignment:
| Q |
82 |
cttcaatcttatggtatttatggtccaacttggtggggtctt |
123 |
Q |
| |
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||||||||||||||||| | ||||||| |||||||||||||| |
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| T |
42075482 |
cttcaatcttatggtatctttggtccagcttggtggggtctt |
42075523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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