View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_high_8 (Length: 344)
Name: NF11589_high_8
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_high_8 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 327
Target Start/End: Original strand, 43435169 - 43435493
Alignment:
| Q |
3 |
atttgacgatttcgacgagtttaaaaagggaggagttgtggagtgatgttgttgtgcttccatattgttataaagggatgcttgagcaaaatgcaatgcg |
102 |
Q |
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||||||||||||| ||| |||| ||||||||| | ||| ||||||| |||||| ||| || ||| ||||||||||||||||||||||||||||||| |
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| T |
43435169 |
atttgacgatttctacgggtttgaaaagggagaatttgaagagtgatattgttgcactttcacatttctataaagggatgcttgagcaaaatgcaatgca |
43435268 |
T |
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| Q |
103 |
gaatgttgtcaaaaaggtggttggcattatttcaaggtctgattgggatgatatggttgagaatgaactggagaaggttaaaattcagctttcggataat |
202 |
Q |
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| T |
43435269 |
gaatgttgttaaaaaggtggttggcattatttcagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaattcagctttcggataat |
43435368 |
T |
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| Q |
203 |
ttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacag |
302 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43435369 |
ttcgtgattagggttatgaaagagcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacag |
43435468 |
T |
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| Q |
303 |
tgacttataatgcagttgctagagt |
327 |
Q |
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| T |
43435469 |
tgacttataatgcagttgctagagt |
43435493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 71 - 327
Target Start/End: Original strand, 43426732 - 43426988
Alignment:
| Q |
71 |
tataaagggatgcttgagcaaaatgcaatgcggaatgttgtcaaaaaggtggttggcattatttcaaggtctgattgggatgatatggttgagaatgaac |
170 |
Q |
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| T |
43426732 |
tataaagggatgcttgagcaggatgcaatgcagagtgttgtcaaaaaggtggttggtattatttcagggtctgattgggacaatgagattgagaatgaac |
43426831 |
T |
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| Q |
171 |
tggagaaggttaaaattcagctttcggataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggt |
270 |
Q |
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| T |
43426832 |
tcgagaaggttaaaattcaactttcggacaatttcgtgattagggttatgaaagagcttcgaaatagtcctttaaaggcttataagttttttcattgggt |
43426931 |
T |
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| Q |
271 |
tgggaagcaatctggttatcaacagaatacagtgacttataatgcagttgctagagt |
327 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43426932 |
tggaaagcaatctggttatctacagaatacagtgacttataatgcagttgctagagt |
43426988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 43443558 - 43443687
Alignment:
| Q |
198 |
ataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaa |
297 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43443558 |
ataatttcgtgattagggttatgaaagagcttcgagatagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaa |
43443657 |
T |
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| Q |
298 |
tacagtgacttataatgcagttgctagagt |
327 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43443658 |
tacagtgacttataatgcagttgctagagt |
43443687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 192 - 327
Target Start/End: Original strand, 43422275 - 43422410
Alignment:
| Q |
192 |
tttcggataatttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatca |
291 |
Q |
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||||||||| ||| |||| ||||| |||||||||||||| |||| ||||||| ||| || |||||| |||||||||||||||||||||||||||| |
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| T |
43422275 |
tttcggatagttttgtgatacgggttttgaaagagcttcgaagttgtcctttaaagggttacaactttttttattgggttgggaagcaatctggttatca |
43422374 |
T |
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| Q |
292 |
acagaatacagtgacttataatgcagttgctagagt |
327 |
Q |
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||| ||| | |||||||| ||||||||||||||||| |
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| T |
43422375 |
acataatgctgtgacttacaatgcagttgctagagt |
43422410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 20650 - 20973
Alignment:
| Q |
1 |
acatttgacgatttcgacgagtttaaaaagggaggagttgtggagtgatgttgttgtgcttccatattgttataaagggatgcttgagcaaaatgcaatg |
100 |
Q |
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|||| |||||||||| | |||||||||| ||||| ||||| |||||||||||||| |||| || ||| || ||||||||||||||||| ||||||||| |
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| T |
20650 |
acatgtgacgatttcaaggagtttaaaaggggagaagttgaagagtgatgttgttgcgctttcacatttctacaaagggatgcttgagcagaatgcaatg |
20749 |
T |
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| Q |
101 |
cggaatgttgtcaaaaaggtggttggcattatttcaaggtctgattgggatgatatggttgagaatgaactggagaaggttaaaattcagctttcggata |
200 |
Q |
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| ||||||||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20750 |
cagaatgttgtcaaaaaggtggttggcattacttaagggtctgattgggatgataaggttgagaatgaactggagaaggttaaaatt---ctttcggata |
20846 |
T |
|
| Q |
201 |
atttcatgattagggttatgaaagagcttcgagaaagtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatac |
300 |
Q |
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||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||||| |
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| T |
20847 |
atttcgtgattagggtcatgaaagagcttcgagatagtcctttaaaggcttataagttttttcattgggttggaaagaaatctagttatcaacggaatac |
20946 |
T |
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| Q |
301 |
agtgacttataatgcagttgctagagt |
327 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
20947 |
agttacttataatgcagttgctagagt |
20973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 40186396 - 40186324
Alignment:
| Q |
237 |
gtcccttaaaggcttataagttttttcattgggttgggaagcaatctggttatcaacagaatacagtgactta |
309 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
40186396 |
gtcctttaaaggcttacaagttttttcattgggttgggaagcaatctggttatcaacataataccgtgactta |
40186324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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