View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11589_low_11 (Length: 341)

Name: NF11589_low_11
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11589_low_11
NF11589_low_11
[»] chr6 (3 HSPs)
chr6 (81-341)||(1623699-1623956)
chr6 (26-75)||(20528392-20528441)
chr6 (34-68)||(5695452-5695486)
[»] scaffold0040 (3 HSPs)
scaffold0040 (231-341)||(60035-60145)
scaffold0040 (107-226)||(59886-60008)
scaffold0040 (236-266)||(60003-60033)
[»] chr4 (7 HSPs)
chr4 (13-73)||(29505513-29505573)
chr4 (32-73)||(4254038-4254079)
chr4 (33-80)||(37390303-37390350)
chr4 (33-85)||(55531543-55531595)
chr4 (26-77)||(1196255-1196306)
chr4 (42-73)||(37726666-37726697)
chr4 (26-74)||(33551637-33551684)
[»] chr5 (1 HSPs)
chr5 (26-81)||(35511688-35511743)
[»] chr3 (4 HSPs)
chr3 (32-81)||(21897000-21897049)
chr3 (32-73)||(35842787-35842828)
chr3 (13-73)||(50659822-50659882)
chr3 (26-73)||(51953863-51953910)
[»] chr7 (5 HSPs)
chr7 (26-74)||(7206724-7206772)
chr7 (30-73)||(22558061-22558104)
chr7 (33-73)||(6590038-6590078)
chr7 (36-75)||(18923343-18923382)
chr7 (26-72)||(40498179-40498225)
[»] chr1 (2 HSPs)
chr1 (25-73)||(2282453-2282501)
chr1 (32-72)||(23350249-23350289)
[»] chr2 (2 HSPs)
chr2 (35-72)||(26188856-26188893)
chr2 (35-72)||(26187625-26187662)
[»] scaffold0064 (1 HSPs)
scaffold0064 (26-74)||(1931-1979)
[»] scaffold0191 (1 HSPs)
scaffold0191 (26-73)||(32245-32292)
[»] chr8 (3 HSPs)
chr8 (26-73)||(23052046-23052093)
chr8 (34-73)||(34437544-34437583)
chr8 (32-73)||(35451485-35451526)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 81 - 341
Target Start/End: Complemental strand, 1623956 - 1623699
Alignment:
Q  81 ataaaaaagaagtaaagaacacacgttggtctttgagtgccacgtaaacatacagttgaagaaaatggttacacatgtcatgagactcaaaatcaaaaca 180  Q
    ||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1623956 ataaaaaagaagtaaagaacac---ttggtcattgagtgccacgtaaacatacagttgaagaaaatggttacacatgtcatgagactcaaaatcaaaaca 1623860  T
Q  181 gcaacagtactacgatcctcactcacacccgaagtcatgtcaaatcgattctttccaaatcccatgcccgaattcatacccgaatcaacaccttcaaccc 280  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  1623859 gcaacagtactacgatcctcactcacacccgaagccatgtcaaatcgattctttcccaatcccatgccagaattcatacccgaatcaacaccttcaaccc 1623760  T
Q  281 aacaggaactccaagaagcagtcaccgtcacaacgggcggtgactcactcctcaacctcct 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1623759 aacaggaactccaagaagcagtcaccgtcacaacgggcggtgactcactcctcaacctcct 1623699  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 20528441 - 20528392
Alignment:
Q  26 cggcggagccgcgctacccgtgttgtagcacgggtatctcgactagtttt 75  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  20528441 cggcgaagccgcgctacccgtgctgtagcacgggtatctcgactagtttt 20528392  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 5695486 - 5695452
Alignment:
Q  34 ccgcgctacccgtgttgtagcacgggtatctcgac 68  Q
    |||||||| ||||||||||||||||||||||||||    
T  5695486 ccgcgctaaccgtgttgtagcacgggtatctcgac 5695452  T

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Target: scaffold0040 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 60035 - 60145
Alignment:
Q  231 ctttccaaatcccatgcccgaattcatacccgaatcaacaccttcaacccaacaggaactccaagaagcagtcaccgtcacaacgggcggtgactcactc 330  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  60035 ctttcccaatcccatgccagaattcatacccgaatcaacaccttcaacccaacaggaactccaagaagcagtcaccgtcacaacgggcggtgactcactc 60134  T
Q  331 ctcaacctcct 341  Q
    |||||||||||    
T  60135 ctcaacctcct 60145  T

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Target: scaffold0040; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 59886 - 60008
Alignment:
Q  107 tggtctttgagtgccacgtaaacatacagttgaagaaaatggttacaca---tgtcatgagactcaaaatcaaaacagcaacagtactacgatcctcact 203  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||   ||| |  |||||||||||||||||||||||| ||||||||||||||||    
T  59886 tggtctttgaatgccacgtaaacatacagttgaagaaaatggttacacatgttgttagaagactcaaaatcaaaacagcaacaatactacgatcctcact 59985  T
Q  204 cacacccgaagtcatgtcaaatc 226  Q
    | ||||||||  |||||||||||    
T  59986 ctcacccgaaaccatgtcaaatc 60008  T

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Target: scaffold0040; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 266
Target Start/End: Original strand, 60003 - 60033
Alignment:
Q  236 caaatcccatgcccgaattcatacccgaatc 266  Q
    |||||||||||||||||||||||||||||||    
T  60003 caaatcccatgcccgaattcatacccgaatc 60033  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 29505573 - 29505513
Alignment:
Q  13 gagacgcgacaaacggcggagccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    |||||||||||  ||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  29505573 gagacgcgacacgcggcgaagccgcgctacccgtgttgtagcgcgggtatctcgactagtt 29505513  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 4254079 - 4254038
Alignment:
Q  32 agccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  4254079 agccgcgctacccgtgctgtagcacgggtatctcgactagtt 4254038  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 37390303 - 37390350
Alignment:
Q  33 gccgcgctacccgtgttgtagcacgggtatctcgactagttttgtata 80  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  37390303 gccgcgctacccgtgctgtagcacgggtgtctcgactagttttatata 37390350  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 55531543 - 55531595
Alignment:
Q  33 gccgcgctacccgtgttgtagcacgggtatctcgactagttttgtataataaa 85  Q
    ||||||||||||| | |||||||||||||||||| |||||||| || ||||||    
T  55531543 gccgcgctacccgcgctgtagcacgggtatctcgcctagttttatacaataaa 55531595  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 1196255 - 1196306
Alignment:
Q  26 cggcggagccgcgctacccgtgttgtagcacgggtatctcgactagttttgt 77  Q
    ||||| |||||||||||||||| ||||||||| || ||||||||||| ||||    
T  1196255 cggcgaagccgcgctacccgtgctgtagcacgagtgtctcgactagtattgt 1196306  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 73
Target Start/End: Original strand, 37726666 - 37726697
Alignment:
Q  42 cccgtgttgtagcacgggtatctcgactagtt 73  Q
    ||||||||||||||||||||||||||||||||    
T  37726666 cccgtgttgtagcacgggtatctcgactagtt 37726697  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 33551637 - 33551684
Alignment:
Q  26 cggcggagccgcgctacccgtgttgtagcacgggtatctcgactagttt 74  Q
    ||||| |||||||||||||||| |  |||||||||||||||||||||||    
T  33551637 cggcgcagccgcgctacccgtgctc-agcacgggtatctcgactagttt 33551684  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 35511743 - 35511688
Alignment:
Q  26 cggcggagccgcgctacccgtgttgtagcacgggtatctcgactagttttgtataa 81  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  35511743 cggcgaagccgcgctacccgtgctgtagcacgggtatctcgactagttttttataa 35511688  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 21897049 - 21897000
Alignment:
Q  32 agccgcgctacccgtgttgtagcacgggtatctcgactagttttgtataa 81  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  21897049 agccgcgctacccgtgctgtagcacgggtatctcgactagttttatataa 21897000  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 35842828 - 35842787
Alignment:
Q  32 agccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  35842828 agccgcgctacccgtgatatagcacgggtatctcgactagtt 35842787  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 50659822 - 50659882
Alignment:
Q  13 gagacgcgacaaacggcggagccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    ||||||||||| || ||| ||| |||||||||||| |  ||||||||||||||||||||||    
T  50659822 gagacgcgacacacagcgaagctgcgctacccgtgctacagcacgggtatctcgactagtt 50659882  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 51953863 - 51953910
Alignment:
Q  26 cggcggagccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    ||||| |||| ||||| ||||| |||||||||||||||||||||||||    
T  51953863 cggcgaagccacgctatccgtgctgtagcacgggtatctcgactagtt 51953910  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 7206772 - 7206724
Alignment:
Q  26 cggcggagccgcgctacccgtgttgtagcacgggtatctcgactagttt 74  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  7206772 cggcgaagccgcgctacccgtgctgtagcacgggtatctcgactagttt 7206724  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 22558061 - 22558104
Alignment:
Q  30 ggagccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  22558061 ggagccgcgctacccgtgctgtagcacgggtatctcgactagtt 22558104  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 6590038 - 6590078
Alignment:
Q  33 gccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  6590038 gccgcgctacccgtgctgtagcacgggtatctcgactagtt 6590078  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 18923343 - 18923382
Alignment:
Q  36 gcgctacccgtgttgtagcacgggtatctcgactagtttt 75  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  18923343 gcgctacccgtactgtagcacgggtatctcgactagtttt 18923382  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 40498179 - 40498225
Alignment:
Q  26 cggcggagccgcgctacccgtgttgtagcacgggtatctcgactagt 72  Q
    ||||| |||| ||||||||||||||||||||| ||||||| ||||||    
T  40498179 cggcgaagccacgctacccgtgttgtagcacgagtatctcaactagt 40498225  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 2282453 - 2282501
Alignment:
Q  25 acggcggagccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    |||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  2282453 acggcgaagccgcgctacccgtgctgtagcatgggtatctcgactagtt 2282501  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 23350249 - 23350289
Alignment:
Q  32 agccgcgctacccgtgttgtagcacgggtatctcgactagt 72  Q
    ||||||||||||| || ||||||| ||||||||||||||||    
T  23350249 agccgcgctacccatgctgtagcatgggtatctcgactagt 23350289  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 26188893 - 26188856
Alignment:
Q  35 cgcgctacccgtgttgtagcacgggtatctcgactagt 72  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  26188893 cgcgctacccgtgttgtagcacgtgtatctcgactagt 26188856  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 26187662 - 26187625
Alignment:
Q  35 cgcgctacccgtgttgtagcacgggtatctcgactagt 72  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  26187662 cgcgctacccgtgttgtagcatgtgtatctcgactagt 26187625  T

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Target: scaffold0064 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 1931 - 1979
Alignment:
Q  26 cggcggagccgcgctacccgtgttgtagcacgggtatctcgactagttt 74  Q
    ||||| |||||||||||||||| | |||||||||| |||||||||||||    
T  1931 cggcgcagccgcgctacccgtgctatagcacgggtctctcgactagttt 1979  T

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Target: scaffold0191 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 32292 - 32245
Alignment:
Q  26 cggcggagccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    ||||| |||||||||||||||| | |||||||||| ||||||||||||    
T  32292 cggcgcagccgcgctacccgtgctatagcacgggtctctcgactagtt 32245  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 23052046 - 23052093
Alignment:
Q  26 cggcggagccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    ||||| |||||||||||||||| | |||||||||| ||||||||||||    
T  23052046 cggcgcagccgcgctacccgtgctatagcacgggtctctcgactagtt 23052093  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 34437583 - 34437544
Alignment:
Q  34 ccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  34437583 ccgcgctacccatgttgtagcatgggtatctcgactagtt 34437544  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 35451485 - 35451526
Alignment:
Q  32 agccgcgctacccgtgttgtagcacgggtatctcgactagtt 73  Q
    |||||||||||||||| | |||||||||||||| ||||||||    
T  35451485 agccgcgctacccgtgctatagcacgggtatcttgactagtt 35451526  T

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