View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_low_13 (Length: 295)
Name: NF11589_low_13
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 38609778 - 38610036
Alignment:
| Q |
20 |
atcaatgacagataaatgagtaaaacaagttaataaagcaaatttttaagcctgggagtaaaggcaaacaccacatgaacaactatcaatttatcatgtg |
119 |
Q |
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| T |
38609778 |
atcaatgacaaataaatgagaaaaacaagttaataatgcaaatttttaagcctgggagtaaaggcaaacaccacatgaacaactatcaatttatcatgcg |
38609877 |
T |
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| Q |
120 |
agctaaataaattccaacaacgaacatgaaaataaaaatatcattagaatgaatgatcagcatttctcttgttgcattacctgacaagcacattccaagc |
219 |
Q |
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| T |
38609878 |
agctaaataaattccaacaacgaacatgaaaataaaaatatcattagaatgaatgattagcatttctcttgttgcattacctgacgagcacattccaagc |
38609977 |
T |
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| Q |
220 |
accgttcgtagtaaccattttttgtatcctaaattttcagaatcaaccgttaataaact |
278 |
Q |
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| T |
38609978 |
accgttcgtagtaaccattttttggatcctaaattttcagaatcaaccgttaataaact |
38610036 |
T |
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