View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_low_2 (Length: 828)
Name: NF11589_low_2
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 696; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 6 - 814
Target Start/End: Original strand, 34256898 - 34257694
Alignment:
| Q |
6 |
cggacgtaggtggaagaaaaatcatagacatggctattgatgcttggaataagttgtcagacaatgagaaacgggtatagtaaatgaatttgacataata |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34256898 |
cggacgtaggtggaagaaaaatcatagacatggctattgatgcttggaataagttgtcagacaatgagaaacgggtatagtaaatgaatttgagataata |
34256997 |
T |
|
| Q |
106 |
atatcgattaaaagtcgaaagtttatatttttgcaacaaatgatgtttgaaatttgccatttctaattacttttcatgtagccatatgaagaggcaagca |
205 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34256998 |
atatcgattaaaagtcgaaagtttatctttttgcaacaaatgatgtttgaaattcgccatttctaattacttttcatgtagccatatgaagaggcaagca |
34257097 |
T |
|
| Q |
206 |
tgaagataaaggaagaagttaaagaagcacccacaaataacaaagaaaagaagaaacatcgaggcgttccaaggggacagaagagtgcatatcaaatatt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34257098 |
tgaagataaaggaagaagttaaagaagcacccacaaataacaaagaaaagaagaaacatcgaggtgttccaaggggacagaagagtgcatatcaaatatt |
34257197 |
T |
|
| Q |
306 |
cctcaagcatgaatgcgctagactgaaagctgatcatcagtttcaaggtgacagaaaactcaaggctattgatgcttggaagatgatgtcccccttggaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34257198 |
cctcaagcatgaatgcgctagactgaaagctgatcatcagtttcaaggtgacagaaaactcaaggctattgatgcttggaagatgatgtcccccttggaa |
34257297 |
T |
|
| Q |
406 |
aaactggtacgataaatgaaattgacataataatatcgaatagaagaagtcgaaagatttatatttttgcaatgaatgatctttgaaattttccacttct |
505 |
Q |
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| T |
34257298 |
aaactggtacgataaatgaaattgacataataatatcgaatagaagaagttgaaagatttatatttttgccataaatgatgtttgaaatttgccacttct |
34257397 |
T |
|
| Q |
506 |
aattacatttcatgtagccatatgaagaggaaagcatgaagataaaggaagaaataaaagcagcaatgatccaaaagagcgctgaagatcttaataggga |
605 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34257398 |
aattacatttcatgtagccatatgaagaggaaagcatgaagataaaggaagaaattaaagcagcaatgatccaaaagagcactgaagatcttaataggga |
34257497 |
T |
|
| Q |
606 |
tgaagagagacctattgtgtgtagtgactactactctgtaacttcacaacctctgtcaaactactcttttggcaacaaaactgcggtggacttggctttt |
705 |
Q |
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| T |
34257498 |
tgaagagagacctattgtgtgtggtgactactactctgtaacttcacaacctctgtcaaacgactcttttggaaacaacgcagcggtggact-------- |
34257589 |
T |
|
| Q |
706 |
aaactgacagaaaaagtatccgaggatccctttttcccaggtgatttgaatgatcatcatttgttagattttccaaccggggaacccaaatgactatact |
805 |
Q |
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| T |
34257590 |
----tgacagaaaaagtatccgaggatccctttttcccaggtgatttgaatgatcatcatttgttagattttccaagcggggaacccaaatgactatact |
34257685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 298 - 740
Target Start/End: Original strand, 41553436 - 41553898
Alignment:
| Q |
298 |
caaatattcctcaagcatgaatgcgctagactgaaagctgatcatcagtttcaaggtgacagaaaactcaaggctattgatgcttggaagatgatgtccc |
397 |
Q |
| |
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||||||||||||||| | ||||| ||| |||||||||||||||||| | |||| |||||||| | |||||||||||||||||||| ||||| |
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| T |
41553436 |
caaatattcctcaagaaggaatgtgctcgactgaaagctgatcatcgggacattggtgtcagaaaacaaatggctattgatgcttggaagaaaatgtcag |
41553535 |
T |
|
| Q |
398 |
ccttggaaaaactggtacgata-aatgaaattgacataataatatcgaatagaagaagtcgaaagatttatatttttgcaatgaa--------tgatct- |
487 |
Q |
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| | || ||| ||||| ||| ||||||||||||||||||||||| | || ||| |||||||||||||| ||||||||| | || | | |
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| T |
41553536 |
acattgataaaaaggtacaatataatgaaattgacataataatatctattaaaag---tcgaaagatttatagttttgcaattagcctatagttggttta |
41553632 |
T |
|
| Q |
488 |
-ttgaaattttccacttctaattacatttcatgtagccatatgaagaggaaagcatgaagataaaggaagaaataaaagcagcaatgatc---------- |
576 |
Q |
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| T |
41553633 |
tttgaaatttgcaacttctaattgcttttcatttagccatatgtagaggaaagcaagaaaataaaggaaaaaaacaaagaagcaatgatcattgacatta |
41553732 |
T |
|
| Q |
577 |
--caaaagagcgctgaagatcttaatagggatgaagagagacctattgtgtgtagtgactactactctgtaacttcacaacctctgtcaaactactcttt |
674 |
Q |
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|| |||||| | |||||||||| ||||||||| |||| |||| ||||||| |||||||||| | | |||||||||| |||| ||||| |||||||| |
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| T |
41553733 |
aacagaagagcacccaagatcttaagagggatgaaaagaggcctaatgtgtgtggtgactactaatgttgaacttcacaagctctatcaaattactcttt |
41553832 |
T |
|
| Q |
675 |
tggcaacaaaactgcggtggacttggcttttaaactgacagaaaaagtatccgaggatcccttttt |
740 |
Q |
| |
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|| ||||| | || | |||||||||||| ||| ||||||||||| |||| ||||||| ||||| |
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| T |
41553833 |
tgtcaacagtgcagcagcggacttggctttcaaaatgacagaaaaaacatccaaggatcctttttt |
41553898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 41553505 - 41553701
Alignment:
| Q |
35 |
atggctattgatgcttggaataagttgtcagacaatgagaaacgggtatagta-aatgaatttgacataataatatcgattaaaagtcgaaag-tttata |
132 |
Q |
| |
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|||||||||||||||||||| || ||||||||| ||| ||| |||| | || |||||| |||||||||||||||| ||||||||||||||| |||||| |
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| T |
41553505 |
atggctattgatgcttggaagaaaatgtcagacattgataaaaaggtacaatataatgaaattgacataataatatctattaaaagtcgaaagatttata |
41553604 |
T |
|
| Q |
133 |
tttttgcaa-----caaatgatg-----tttgaaatttgccatttctaattacttttcatgtagccatatgaagaggcaagcatgaagataaaggaa |
219 |
Q |
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|||||||| | | | || |||||||||||| | |||||||| |||||||| |||||||||| ||||| ||||| ||| ||||||||| |
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| T |
41553605 |
gttttgcaattagcctatagttggtttatttgaaatttgcaacttctaattgcttttcatttagccatatgtagaggaaagcaagaaaataaaggaa |
41553701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 37558239 - 37558310
Alignment:
| Q |
149 |
tgtttgaaatttgccatttctaattacttttc-atgtagccatatgaagaggcaagcatgaagataaaggaa |
219 |
Q |
| |
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||||||||| || |||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||| |
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|
| T |
37558239 |
tgtttgaaacttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataaaggaa |
37558310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 555
Target Start/End: Original strand, 37558241 - 37558310
Alignment:
| Q |
487 |
tttgaaattttccacttctaattacatttc-atgtagccatatgaagaggaaagcatgaagataaaggaa |
555 |
Q |
| |
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||||||| || ||| |||||||||| ||| ||||||||||||| |||||||||| ||||||||||||| |
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| T |
37558241 |
tttgaaacttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataaaggaa |
37558310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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