View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11589_low_25 (Length: 239)
Name: NF11589_low_25
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_low_25 |
 | |
|
| [»] scaffold0040 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1623647 - 1623424
Alignment:
| Q |
1 |
cctcaaagaaactgtattgtaccctattcatcatcttctctgtttttcaatcattccacacacgtctaacaagtctttgtgtttatttgtttgtttcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1623647 |
cctcaaagaaactgtattgtaccctattcatcatcttctctgtttttcaatcattccacacacgtctaacaagtctttgtgtttgtttgtttgtttcaga |
1623548 |
T |
|
| Q |
101 |
tagtgatggaaacatggggtttaactggacaacgtgttggtgacttcactctatattgtggtcttcttggcactgcttttctacttttgaagtcttacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1623547 |
tagtgatggaaacatggggtttaactggacaacgtgttggtgacttcactctatattgtggtcttcttggcactgcttttctacttttgaagtcttacca |
1623448 |
T |
|
| Q |
201 |
tgtcacttgcaataccaatgatct |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1623447 |
tgtcacttgcaataccaatgatct |
1623424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 68137 - 68254
Alignment:
| Q |
1 |
cctcaaagaaactgtattgtaccctattcatcatcttctctgtttttcaatcattccacacacgtctaacaagtctttgtgtttatttgtttgtttcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
68137 |
cctcaaagaaactgtattgtaccctattcatcatcttctctgtttttcaatcattccacacacgtctaacaagtctttgtgtttgtttgtttgtttcaga |
68236 |
T |
|
| Q |
101 |
tagtgatggaaacatggg |
118 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
68237 |
taatgatggaaacatggg |
68254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 69650 - 69764
Alignment:
| Q |
110 |
aaacatggggtttaactggacaacgtgttggtgacttcactctatattgtggtcttcttggcactgcttttctacttttgaagtcttaccatgtcacttg |
209 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
69650 |
aaacatggggtttaactggacaatgtgttggtgacttcactctctattgtggtctccttggcactgcatttctacttttgaagtcttaccatgtcacttg |
69749 |
T |
|
| Q |
210 |
caataccaatgatct |
224 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
69750 |
caataccaatgatct |
69764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University