View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_low_27 (Length: 236)
Name: NF11589_low_27
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_low_27 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 101761 - 101559
Alignment:
| Q |
19 |
gtttaatatgtgataaatggttcaattatggtatcatccaatcaatcccctttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacg |
118 |
Q |
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| T |
101761 |
gtttaatatgtgataaattgttcaatcatggtatcatccaatcaatcccctttcatatattgctcgaagagtatcaaccttaacctcgacaagaaccacg |
101662 |
T |
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| Q |
119 |
ttcataacccaaactggattcttaatcaaagcagatgcaaatccacccaagttagcattcatatccaaatgatttatagccccaaagatttatagcattc |
218 |
Q |
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| T |
101661 |
ttcataacccaaacaggattcttaatcaaagcagatgcaaatccaccatagctagcattcatatccaaatgatttatggccccaaagatttatagcattc |
101562 |
T |
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| Q |
219 |
atc |
221 |
Q |
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||| |
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| T |
101561 |
atc |
101559 |
T |
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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 45784912 - 45785042
Alignment:
| Q |
55 |
tccaatcaatcccctttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacgttcataacccaaactggattcttaatcaaagcagat |
154 |
Q |
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| T |
45784912 |
tccaatcagtcccctttcatatattgccccaagggtgtcaaccttagcctggacaggaaccacattcataacccaaacaggattcttaactaaagcagat |
45785011 |
T |
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| Q |
155 |
gcaaatccacccaagttagcattcatatcca |
185 |
Q |
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| T |
45785012 |
gcaaatccacccaagttagcattcatatcca |
45785042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 10281461 - 10281577
Alignment:
| Q |
70 |
ttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacgttc----ataacccaaactggattcttaatcaaagcagatgcaaatccacc |
165 |
Q |
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| T |
10281461 |
ttcatatattgctccaagtgtatcaaccttagcatggacaggaaccacgttcatatataacccaaacatggttcttaatcaaagcaaatgcaaatccacc |
10281560 |
T |
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| Q |
166 |
caagttagcattcatat |
182 |
Q |
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| T |
10281561 |
gtagttagcattcatat |
10281577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 28638543 - 28638624
Alignment:
| Q |
102 |
cctcgacaggaaccacgttcataacccaaactggattcttaatcaaagcagatgcaaatccacccaagttagcattcatatc |
183 |
Q |
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| T |
28638543 |
cctcgaccggaacaacattcatgacccaaactggatcatcaatcattgcagctgcaaatcctcccaagtaagcattcatatc |
28638624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 503625 - 503700
Alignment:
| Q |
110 |
ggaaccacgttcataacccaaactggattcttaatcaaagcagatgcaaatccacccaagttagcattcatatcca |
185 |
Q |
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| T |
503625 |
ggaacaacattcataacccaaactggatatttcaccaatgcagctgcaaatccaccaaagccagcattcatatcca |
503700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 64236 - 64361
Alignment:
| Q |
55 |
tccaatcaatcccctttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacgttcataacccaaactggattcttaatcaaagcagat |
154 |
Q |
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| T |
64236 |
tccaatcaaccctctttcatatattgctccaagtgtatcaactttagcttgaataggaacaacattcataacccaaataggatatttaacaagtgaagct |
64335 |
T |
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| Q |
155 |
gcaaatccacccaagttagcattcat |
180 |
Q |
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| T |
64336 |
gcaaatccacccaaataagcattcat |
64361 |
T |
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