View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_low_4 (Length: 549)
Name: NF11589_low_4
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 6 - 533
Target Start/End: Original strand, 37595306 - 37595849
Alignment:
| Q |
6 |
aggagcacagataatggagataatttgtttccttgcagatccacatgacactaattgatgtggcacttgtgcctcttacatagaaaattgaatatgaaac |
105 |
Q |
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| T |
37595306 |
aggagcacaaataatggagataatttgtttccttgcagatccacatgacactaattgatgtggcacttgtgcctcttacatagaaaattgaatatgaaac |
37595405 |
T |
|
| Q |
106 |
acacaaaaatagaaaatggaatagtctagtgaatttgtgttaacctcgtaacaaatgtagcaaaaaagtacacagtttctttatggctatgccattaatt |
205 |
Q |
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| T |
37595406 |
acacaaaaatagaaaatggaatagtctagtgaatttgtgttaacctcataacaaatgtagcaaaaaagtacacagtttctttatggctatgccattaatt |
37595505 |
T |
|
| Q |
206 |
ttgacacatacccttttgattgattttttgttctaagataaatgaaataaatcactaaaagaaggtattgtttcaataaattaaattgaaaattttgaac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37595506 |
ttgacacatacccttttgattgattttttgttctaagataaatgaaataaatcactaaaagaaggtattgtttcaataaattaaattgaaaattttgaac |
37595605 |
T |
|
| Q |
306 |
tacactagatacatagaataatgactctatttctattatatatgtgtactgnnnnnnnnnnnnnntaagagaagacactaattcaacctacatatattat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37595606 |
tacactagatacatagaataatgactctatttctattatatatgtgtactaaaaaagaaaaaagataagagaagacactaattcaacctacatatattat |
37595705 |
T |
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| Q |
406 |
atcatggttt----------------acctaaaaggttttgaagtctctacaacatcaaaaggtttggagcgaaattgaaccacaatttaaagccatgct |
489 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37595706 |
atcatggttttaaattgtggtcgacaacctaaaaggttttgaagtctctacaacatcaaaaggtttggagcgaaattgaaccacaatttaaagccatgct |
37595805 |
T |
|
| Q |
490 |
acatatataatgtagatgnnnnnnntgaaatttgctctatattt |
533 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |
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| T |
37595806 |
acatatataatgtagatgaaaaaaatgaaatttgctctatattt |
37595849 |
T |
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