View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_low_5 (Length: 517)
Name: NF11589_low_5
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Original strand, 52807127 - 52807622
Alignment:
| Q |
20 |
gttcacacctataaaatacaatggtgtctttggccttcaatttcttatccttcacaaaccgattccatcctctagtgaacacatagctctggctgctctt |
119 |
Q |
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| T |
52807127 |
gttcacacctataaaatacaatggtgtctttggccttcaatttcttatccttcacaaaccgattccatcctctagtgaacacatagctctggctgctctt |
52807226 |
T |
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| Q |
120 |
ccaatagcaatatcgaaacttccacaatcgcatgagtttgtcataaaacacaacttccacgtcattgccacaaaccaaaggaaaataggtaactgcatgt |
219 |
Q |
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| T |
52807227 |
ccaatagcaatatcgaaacttccacaatcgcatgagtttgtcataaaacacaacttccacgtcattgccacaaaccaaaggaaaataggtaactgcatgt |
52807326 |
T |
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| Q |
220 |
tttttcgggacgacaagcctattgagtttaccaacatcacttggtgttaattctttttgaaaaagtagttgtgtgcaagaaaattgttcctcacccttca |
319 |
Q |
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| T |
52807327 |
tttttcgggacgacaagcctattgagtttaccaacatcacttggtgttaattctttttgaaaaagtagttgtgtgcaagaaaattgttcctcatccttca |
52807426 |
T |
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| Q |
320 |
cccctataacaacaccttctttgcctgcaccttgg---ctttcattatttctaagaaatgttgttgcaaaattagaggggtatgttccatttctaatcat |
416 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807427 |
cccctataacaacaccttctttgcctgcaccttggcgcctttcattatttctaagaaatgttgttgcaaaattagaggggtatgttccatttctaatcat |
52807526 |
T |
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| Q |
417 |
gatcataattgtttccatgttatattgactttgaaacataggttcttcaactgtttggttattccatgcaaagtttctatggctttctctgcttct |
512 |
Q |
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| T |
52807527 |
gatcataattgtttccatgctatattgactttgaaacataggttcttgaactgtttggttattccatgcaaagtttctatggctttctctgcttct |
52807622 |
T |
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