View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11589_low_8 (Length: 422)
Name: NF11589_low_8
Description: NF11589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11589_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 37544832 - 37545240
Alignment:
| Q |
1 |
ataatttggagttgaggaatcaaaagcataaaagaggcttgcgtcaatgttcaatgcacgaggcagacatgtgagataaagccacatgtgacacaaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
37544832 |
ataatttggagttgaggaatcaaaagcataaaagaggctttcgtcaatgttcaatgcgcgaggca----tgtgagataaagccacatgtgacacaaaatt |
37544927 |
T |
|
| Q |
101 |
ccctaatctctcatcattatgcgttgacagataatcctacgctcaaggcgcatagatagccaatcaaatggtgtcaatgcattaattagaatcatgtgtg |
200 |
Q |
| |
|
|||| ||||||||||||| ||| ||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37544928 |
cccttatctctcatcattgtgcattggcagataatcccacgctcaaggcgcataaatagtcaatcaaatggtgtcaatgcattaattagaatcatgtgtg |
37545027 |
T |
|
| Q |
201 |
aggcatgtttgcaacctaagtttatctatataa------tttcacccataagtgaaggatccgactttaacgcctctgaggttcaaggtgtgatccaaca |
294 |
Q |
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|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37545028 |
aggcgtgtttgcaacctaagtttatctatataaacctagtttcacccataagtgaaggatccgactttaacgcctctgaggttcaaagtgtgatccaaca |
37545127 |
T |
|
| Q |
295 |
accataaggtaacatttttaaaggcttgaaattgaaaacaagttttaagataaaaccatttgtttattattatcatgtgtatctaaactttaataaatta |
394 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37545128 |
accataaggtaacatttttaaatgcttgaaattgaaaacaagttttaagataaaacactttgtttattattatcatgtgtatctaaactttaatagatta |
37545227 |
T |
|
| Q |
395 |
tggttgaatgatg |
407 |
Q |
| |
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|| |||||||||| |
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|
| T |
37545228 |
tgattgaatgatg |
37545240 |
T |
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