View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_high_14 (Length: 519)

Name: NF1158_high_14
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_high_14
NF1158_high_14
[»] chr1 (8 HSPs)
chr1 (171-512)||(45067671-45068012)
chr1 (29-284)||(45082921-45083176)
chr1 (29-329)||(45075451-45075746)
chr1 (29-137)||(45068021-45068129)
chr1 (29-111)||(45078769-45078851)
chr1 (437-506)||(45078467-45078536)
chr1 (179-280)||(45078620-45078721)
chr1 (356-498)||(45075245-45075384)
[»] chr7 (2 HSPs)
chr7 (29-282)||(34505293-34505548)
chr7 (423-512)||(34505006-34505095)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 171 - 512
Target Start/End: Complemental strand, 45068012 - 45067671
Alignment:
Q  171 ttatttcattcttctgattaaactttatatcttcagtaacataattataaacggacttacaattctggcaccagtggacgttccaaacacagatggcata 270  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  45068012 ttattttattcatctgactaaactttatatcttcagtaacataattataaatagacttactattcttgcaccagtggacgttccaaacacagatggcata 45067913  T
Q  271 gaccctggtaatgtattcatggtccattagacattcaatcatttagaaattcgtttagannnnnnngtccaaattctaattattatttttcaacttaatg 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       ||||||||||||||||||||||||||||||||||    
T  45067912 gaccctggtaatgtattcatggtccattagacattcaatcatttagaaattagtttagacttttttgtccaaattctaattattatttttcaacttaatg 45067813  T
Q  371 gagtttatgtcattgatattgaataaaaggttcaattgcaaggactaaattgctaaccagttcttgtttttcccattttttcccttcttaacagactcgt 470  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  45067812 gagtttatgtcattcatattgaataaaaggttcagttgcaaggactaaattgctaaccacttcttgtttttcccatttttgcccttcttaacagactcgt 45067713  T
Q  471 gtacaaacgttctaattgaagacaactacattgtctgtggtg 512  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  45067712 gtacaaacgttctaattgaagacaactacattgtctctggtg 45067671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 29 - 284
Target Start/End: Complemental strand, 45083176 - 45082921
Alignment:
Q  29 attctgatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttgtccatccaatttacagcaggtttgatgagtcgccattttcaaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||| ||||| | ||||| |||    
T  45083176 attctgatcaaatccaaatatcaaatctcactttggtcaattccccttcttggtttgtacatccagtttacagcaggtttgacgagtcacaatttttaaa 45083077  T
Q  129 tttctcaactttatttaaagcattattttctatatgtgtgtgttatttcattcttctgattaaactttatatcttcagtaacataattataaacggactt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45083076 tttctcaactttatttaaagcattattttctatatgtgtgtgttatttcattcttctgattaaactttatatcttcagtaacataattataaacggactt 45082977  T
Q  229 acaattctggcaccagtggacgttccaaacacagatggcatagaccctggtaatgt 284  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  45082976 acaattcttgcaccagtggacgttccaaacacagatggcatagacccaggtaatgt 45082921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 29 - 329
Target Start/End: Complemental strand, 45075746 - 45075451
Alignment:
Q  29 attctgatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttgtccatccaatttacagcaggtttgatgagtcgccattttcaaa 128  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||| ||||||    
T  45075746 attctgatcaaatccaaatatccaatctcactttgatcaattccccttcttggtttgtccatccagtttacagcaggtttgattagtcaccatcttcaaa 45075647  T
Q  129 tttctcaactttatttaaagcattattttctatatgtgtgtgttatttcattcttctgattaaactttata-------tcttcagtaacataattataaa 221  Q
    ||| ||||| ||||           |||||  || || | | ||||||| ||| ||||| |||||||||||       ||||||||||||||||||||||    
T  45075646 tttttcaaccttat-----------ttttc--taagtatatattatttcgttcatctgactaaactttatatcttcattcttcagtaacataattataaa 45075560  T
Q  222 cggacttacaattctggcaccagtggacgttccaaacacagatggcatagaccctggt-aatgtattcatggtccattagacattcaatcatttagaaat 320  Q
     |||||||||||||| |||||||| ||| |||| ||||| |||||||||||||| ||| ||||||||  |||||  || || || |||||||||||||||    
T  45075559 tggacttacaattcttgcaccagtcgacattcctaacacggatggcatagacccaggtaaatgtatttttggtcagtttgatatacaatcatttagaaat 45075460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 45068129 - 45068021
Alignment:
Q  29 attctgatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttgtccatccaatttacagcaggtttgatgagtcgccattttcaaa 128  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45068129 attctgatcaaatccaaatatcaaatctcactttgatcaactctcctaattggtttgtccatccaatttacagcaggtttgatgagtcgccattttcaaa 45068030  T
Q  129 tttctcaac 137  Q
    |||||||||    
T  45068029 tttctcaac 45068021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 45078851 - 45078769
Alignment:
Q  29 attctgatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttgtccatccaatttacagcaggtttgat 111  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||    |||||||| ||||||||||||||||||||||||    
T  45078851 attctgatcaaatccaaatatcaaatctcactttgatcaactctccaacatggtttgttcatccaatttacagcaggtttgat 45078769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 437 - 506
Target Start/End: Complemental strand, 45078536 - 45078467
Alignment:
Q  437 tttttcccattttttcccttcttaacagactcgtgtacaaacgttctaattgaagacaactacattgtct 506  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||    
T  45078536 tttttcccatttttccccttcttaacagactcatgtacaaacgttagaattgaagacaacttcattgtct 45078467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 45078721 - 45078620
Alignment:
Q  179 ttcttctgattaaactttatatcttcagtaacataattataaacggacttacaattctggcaccagtggacgttccaaacacagatggcatagaccctgg 278  Q
    |||||||||| || ||| || ||| |||||||||||||||||| |||||||| ||||| |||||||| |||  ||||||||||||||| ||| |||| ||    
T  45078721 ttcttctgatcaagcttcatttctgcagtaacataattataaatggacttaccattcttgcaccagtagactctccaaacacagatggaataaacccagg 45078622  T
Q  279 ta 280  Q
    ||    
T  45078621 ta 45078620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 498
Target Start/End: Complemental strand, 45075384 - 45075245
Alignment:
Q  356 tttttcaacttaatggagtttatgtcattgatattgaataaaaggttcaattgcaaggactaaattgctaaccagttcttgtttttcccattttttccct 455  Q
    |||| ||||| ||||||  ||||| | || ||| |||| || ||| ||||||||||||| |||||| |  |||| |||||||||||||  ||||||   |    
T  45075384 ttttccaactaaatggaacttatgaccttcatactgaacaagaggctcaattgcaaggagtaaattaccgaccacttcttgtttttccattttttt---t 45075288  T
Q  456 tcttaacagactcgtgtacaaacgttctaattgaagacaacta 498  Q
     |||| |||| || |||||||||||   |||||||||||||||    
T  45075287 acttaccagattcatgtacaaacgtcagaattgaagacaacta 45075245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 29 - 282
Target Start/End: Complemental strand, 34505548 - 34505293
Alignment:
Q  29 attctgatcaaatccaaatatcaaatctcactttggtcaattcccctttttggtttgtccatccaatttacagcaggtttgatgagtcgccattttcaa- 127  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |  | ||||||||||     
T  34505548 attctgatcaaatccaaatatcaaatctcactttgatcaattccccttcttggtttgtccatccaacttacagcaggtttgataatgcaccattttcaat 34505449  T
Q  128 atttctcaactttatttaaagcatta-ttttctatatgtgtgtgttatttcattcttctgattaaactttatatcttcagtaacataattataaacggac 226  Q
     ||||||||| | | |      |||| |||||| |||   |    |||||||||||| |||| || |||||| |||||||||||||||||||||| || |    
T  34505448 ttttctcaacctcaatatctttattatttttctttatacatacaatatttcattcttttgatcaagctttatttcttcagtaacataattataaagggtc 34505349  T
Q  227 ttacaattctggcaccagtggacgttccaaacacagatggcatagaccctggtaat 282  Q
    |||| ||||| |||||||| |||  ||||||||||||||| |||||||| ||||||    
T  34505348 ttaccattcttgcaccagtagactctccaaacacagatggaatagacccaggtaat 34505293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 512
Target Start/End: Complemental strand, 34505095 - 34505006
Alignment:
Q  423 ctaaccagttcttgtttttcccattttttcccttcttaacagactcgtgtacaaacgttctaattgaagacaactacattgtctgtggtg 512  Q
    ||||||| | |||| |||| ||||||||  ||||||||||||| || | ||| ||||||   || ||||||||||||||||||| |||||    
T  34505095 ctaaccactgcttgatttttccatttttcgccttcttaacagattcatctacgaacgttaggatcgaagacaactacattgtctctggtg 34505006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University