View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_high_28 (Length: 384)

Name: NF1158_high_28
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_high_28
NF1158_high_28
[»] chr5 (11 HSPs)
chr5 (114-270)||(1501184-1501343)
chr5 (304-374)||(1501377-1501447)
chr5 (206-261)||(38951524-38951579)
chr5 (304-375)||(25955968-25956039)
chr5 (215-269)||(38280192-38280246)
chr5 (304-374)||(38280281-38280351)
chr5 (215-270)||(25955879-25955934)
chr5 (315-373)||(7886377-7886435)
chr5 (215-270)||(42250241-42250296)
chr5 (219-260)||(7886489-7886530)
chr5 (304-365)||(42250146-42250207)
[»] chr8 (5 HSPs)
chr8 (304-374)||(3780367-3780437)
chr8 (304-374)||(4076952-4077022)
chr8 (215-270)||(3780278-3780333)
chr8 (215-270)||(4076863-4076918)
chr8 (143-194)||(31386901-31386952)
[»] chr7 (18 HSPs)
chr7 (304-374)||(496704-496774)
chr7 (304-375)||(7527272-7527343)
chr7 (215-270)||(40855070-40855125)
chr7 (304-370)||(2286483-2286549)
chr7 (141-192)||(12103200-12103251)
chr7 (215-270)||(23844760-23844815)
chr7 (215-269)||(496809-496863)
chr7 (304-374)||(11765728-11765798)
chr7 (215-269)||(11765833-11765887)
chr7 (305-375)||(25185942-25186012)
chr7 (215-270)||(2286583-2286638)
chr7 (213-260)||(31427168-31427215)
chr7 (143-194)||(41546047-41546098)
chr7 (331-375)||(42535249-42535293)
chr7 (215-270)||(7527183-7527238)
chr7 (215-261)||(42535134-42535180)
chr7 (304-374)||(48057707-48057777)
chr7 (304-374)||(23844656-23844726)
[»] chr3 (11 HSPs)
chr3 (141-194)||(13823007-13823060)
chr3 (213-270)||(49786518-49786575)
chr3 (304-370)||(47940851-47940917)
chr3 (304-374)||(49786414-49786484)
chr3 (304-373)||(8153001-8153070)
chr3 (215-269)||(8436815-8436869)
chr3 (143-194)||(4264452-4264503)
chr3 (226-270)||(47940951-47940995)
chr3 (304-374)||(8436904-8436974)
chr3 (305-373)||(48778982-48779050)
chr3 (344-375)||(29836817-29836848)
[»] chr4 (6 HSPs)
chr4 (304-375)||(52055156-52055227)
chr4 (142-194)||(14056243-14056295)
chr4 (143-194)||(55039345-55039396)
chr4 (215-270)||(52055067-52055122)
chr4 (215-256)||(49866778-49866819)
chr4 (304-363)||(1158263-1158322)
[»] chr2 (4 HSPs)
chr2 (304-375)||(11828977-11829048)
chr2 (215-270)||(11829082-11829137)
chr2 (304-374)||(13922206-13922276)
chr2 (215-269)||(13922311-13922365)
[»] chr1 (14 HSPs)
chr1 (213-270)||(20186758-20186815)
chr1 (215-269)||(9672891-9672945)
chr1 (304-374)||(20186849-20186919)
chr1 (304-374)||(30339657-30339727)
chr1 (142-194)||(25871704-25871756)
chr1 (143-194)||(19151991-19152042)
chr1 (143-194)||(23679050-23679101)
chr1 (331-373)||(9673004-9673046)
chr1 (215-269)||(30339762-30339816)
chr1 (304-374)||(51787293-51787363)
chr1 (142-194)||(17224166-17224218)
chr1 (130-189)||(38245597-38245656)
chr1 (215-261)||(51787405-51787451)
chr1 (304-361)||(43740415-43740472)
[»] chr6 (2 HSPs)
chr6 (215-270)||(33594438-33594493)
chr6 (304-370)||(33594527-33594593)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 1501184 - 1501343
Alignment:
Q  114 ttgggctgttttttatttattaatgacattgccaca--taagggtggtagaaggtgtattgccacctatggtggtatacctataaggactcaaaaattat 211  Q
    ||||| ||||| ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501184 ttgggttgtttgttaattattaatgacattgccacacataagggtggtagaaggtgtattgccacctatggtggtatacctataaggactcaaaaattat 1501283  T
Q  212 ggaaaaatgattgatagaccactcatattttcataccacccataca-cccccacatattt 270  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  1501284 ggaaaaatgattggtagaccactcatattttcataccacacatacaccccccacatattt 1501343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 1501377 - 1501447
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1501377 caaagtgtatatggggtctaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgtcacctatg 1501447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 38951579 - 38951524
Alignment:
Q  206 aattatggaaaaatgattgatagaccactcatattttcataccacccatacacccc 261  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38951579 aattattgaaaaatgattgatagaccactcatattttcataccacccatacacccc 38951524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 25955968 - 25956039
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatga 375  Q
    |||||||||| |||||| ||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||    
T  25955968 caaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaaatgtgtatgccacctatga 25956039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 38280192 - 38280246
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatatt 269  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  38280192 aaaatgattggtagaccactcatatttccataccactcatacacccccacatatt 38280246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 38280281 - 38280351
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| |||||| ||||  || ||||| |||||||||||||||||||||||||||| |||||||||    
T  38280281 caaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtataccacctatg 38280351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 25955879 - 25955934
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||    
T  25955879 aaaatgattggtagaccactcataatttcatatcacccatacacccctacatattt 25955934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 7886435 - 7886377
Alignment:
Q  315 tggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctat 373  Q
    |||| ||||||| |||||||| |||||| |||||||||||||||||||||| |||||||    
T  7886435 tgggatttaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgtcacctat 7886377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 42250296 - 42250241
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||| ||||||||||||| ||||||| ||||| | |||||||||||||||    
T  42250296 aaaatgattggtagaccactcataatttcatatcacccgtgcacccccacatattt 42250241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 7886530 - 7886489
Alignment:
Q  219 tgattgatagaccactcatattttcataccacccatacaccc 260  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  7886530 tgattggtagaccactaatattttcataccacccatacaccc 7886489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 42250207 - 42250146
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatg 365  Q
    |||||||||| |||||| || || |||||||| |||||| ||||||||||||||||| ||||    
T  42250207 caaagtgtttgtggggtctaagccacatgtcacatgtttgtgtggaggtttaagtgtctatg 42250146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 3780367 - 3780437
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| | ||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||    
T  3780367 caaagtgtttctcgggtttaggctacatgtcacatgtttgtgtggaggtttgagtgtgtatgccacctatg 3780437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 4076952 - 4077022
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||| ||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  4076952 caaattgtttgtggggtctaggctacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacctatg 4077022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 3780278 - 3780333
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  3780278 aaaatgattggtagaccactcatattttcataccacccatacacccctacatattt 3780333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 4076863 - 4076918
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||| ||||||||||||| |||||||||||||||||||| |||| |||||    
T  4076863 aaaatgattggtagaccactcataatttcataccacccatacacctccacttattt 4076918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 31386952 - 31386901
Alignment:
Q  143 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 194  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||| ||||||    
T  31386952 tgccacataagagtggtataaggtgtgttgccacctatggtggtacacctat 31386901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 496774 - 496704
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| |||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||    
T  496774 caaagtgtttgtggggtctaggacacgtgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 496704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 7527272 - 7527343
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatga 375  Q
    |||||||||||||| || ||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  7527272 caaagtgtttatggagtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccaccaatga 7527343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 40855070 - 40855125
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  40855070 aaaatgattgttagaccacttatattttcataccacccatacacccccacatattt 40855125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 2286549 - 2286483
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacc 370  Q
    |||||||||| |||||| ||||| |||||||| |||||| |||||||||||||||||||||||||||    
T  2286549 caaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacc 2286483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 12103251 - 12103200
Alignment:
Q  141 attgccacataagggtggtagaaggtgtattgccacctatggtggtatacct 192  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  12103251 attgccacacaagggtggtataaggtgtattgccacctatggtggtatacct 12103200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 23844815 - 23844760
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  23844815 aaaatgattgataaaccactcatattttcataccacctatacacccccatatattt 23844760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 496863 - 496809
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatatt 269  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  496863 aaaatgattggtagaccactcatatttccataccactcatacacccccacatatt 496809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 11765798 - 11765728
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| ||||||  |||  || ||||| ||||||||||||||||||||||||||||||||||||||    
T  11765798 caaagtgtttgtggggtcaaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatg 11765728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 11765887 - 11765833
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatatt 269  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  11765887 aaaatgattggtagaccactcatatttccataccactcatacacccccacatatt 11765833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 25185942 - 25186012
Alignment:
Q  305 aaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatga 375  Q
    ||||| ||| |||||| ||||| |||||||| |||||| |||||||||||||||||||||| |||||||||    
T  25185942 aaagtatttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgtcacctatga 25186012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 2286638 - 2286583
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||    
T  2286638 aaaatgattggtagaccactcataatttcataccacccatacaccctcatatattt 2286583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 31427168 - 31427215
Alignment:
Q  213 gaaaaatgattgatagaccactcatattttcataccacccatacaccc 260  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  31427168 gaaaaatgattggtagaccactcatattttcataccacccaaacaccc 31427215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 41546098 - 41546047
Alignment:
Q  143 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 194  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  41546098 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 41546047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 42535249 - 42535293
Alignment:
Q  331 tgtcatatgtttatgtggaggtttaagtgtgtatgccacctatga 375  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||    
T  42535249 tgtcacatgtttatgtggaggtttaagtgtgtatgtcacctatga 42535293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 7527183 - 7527238
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||| ||||||||||||| |||| ||||||||||||| ||||| ||||||    
T  7527183 aaaatgattggtagaccactcataatttcgtaccacccatacagccccatatattt 7527238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 42535134 - 42535180
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccc 261  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||    
T  42535134 aaaatgattggtagaccactcatatttccataccactcatacacccc 42535180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 48057707 - 48057777
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| |||||| ||||  || ||||| ||||||||||||| |||||| | |||||||||||||||    
T  48057707 caaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaagtttaaatatgtatgccacctatg 48057777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 23844726 - 23844656
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| || ||| ||||  |||||||| |||||||||||||| ||| ||||||||||  |||||||    
T  23844726 caaagtgtttgtgaggtctagggcacatgtcacatgtttatgtggagatttgagtgtgtatgttacctatg 23844656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 13823007 - 13823060
Alignment:
Q  141 attgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 194  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13823007 attgccacataagggtggtataaggtgtattgccacctatggtggtatacctat 13823060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 49786575 - 49786518
Alignment:
Q  213 gaaaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  49786575 gaaaaatgattggtagaccactcatattttcataccactcatacacccccacatattt 49786518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 47940917 - 47940851
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacc 370  Q
    |||||||||| |||||| ||||| |||||||| |||||| |||||||||||||||||||||||||||    
T  47940917 caaagtgtttgtggggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgtatgccacc 47940851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 49786484 - 49786414
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| |||||| ||||  || ||||| ||||||||||||||||||||||||||||||||||||||    
T  49786484 caaagtgtttgtggggtctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatg 49786414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 8153070 - 8153001
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctat 373  Q
    |||||||||| ||| || ||||| |||||||| ||||||||||||||||||| |||||||||||||||||    
T  8153070 caaagtgtttgtggagtctaggccacatgtcacatgtttatgtggaggtttaggtgtgtatgccacctat 8153001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 8436815 - 8436869
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatatt 269  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  8436815 aaaatgattggtagaccactcatatttccataccactcatacacccccacatatt 8436869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 4264503 - 4264452
Alignment:
Q  143 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 194  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  4264503 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 4264452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 47940995 - 47940951
Alignment:
Q  226 tagaccactcatattttcataccacccatacacccccacatattt 270  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||    
T  47940995 tagaccactcataatttcataccacccatacacccccatatattt 47940951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 8436904 - 8436974
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| |||||| || |  || |||||||| ||||||| ||||||||| |||||||||||||||||    
T  8436904 caaagtgtttgtggggtctaagacacgtgtcatatatttatgtagaggtttaaatgtgtatgccacctatg 8436974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 48778982 - 48779050
Alignment:
Q  305 aaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctat 373  Q
    ||||||||||||| || ||| | |||||||| || |||||||||| |||||| || |||||||||||||    
T  48778982 aaagtgtttatggagtctagaccacatgtcacatatttatgtggatgtttaaatgagtatgccacctat 48779050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 29836817 - 29836848
Alignment:
Q  344 tgtggaggtttaagtgtgtatgccacctatga 375  Q
    ||||||||||||||||||||||||||||||||    
T  29836817 tgtggaggtttaagtgtgtatgccacctatga 29836848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 52055156 - 52055227
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatga 375  Q
    |||||||||| |||||| ||||| |||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  52055156 caaagtgtttgtggggtctaggccacatgtcacatgtttgtgtagaggtttaagtgtgtatgccacctatga 52055227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 14056243 - 14056295
Alignment:
Q  142 ttgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 194  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  14056243 ttgccacacaagggtggtataaggtgtattgccacctatggtggtacacctat 14056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 55039396 - 55039345
Alignment:
Q  143 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 194  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  55039396 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 55039345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 52055067 - 52055122
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||| ||||||||||||| ||||||| || |||||||||| |||||||||    
T  52055067 aaaatgattggtagaccactcataatttcataacatccatacaccctcacatattt 52055122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 49866819 - 49866778
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatac 256  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  49866819 aaaatgattggtagaccactcatattttcataccatccatac 49866778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 1158263 - 1158322
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgta 363  Q
    |||| ||||| | |||| ||||| |||||||| |||||| ||||||||||||||||||||    
T  1158263 caaaatgtttgtagggtctaggccacatgtcacatgtttgtgtggaggtttaagtgtgta 1158322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 11829048 - 11828977
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatga 375  Q
    |||||||||| |||||| ||||  |||||||| || ||||||||||||||||||||||||||||||||||||    
T  11829048 caaagtgtttgtggggtctaggacacatgtcacatatttatgtggaggtttaagtgtgtatgccacctatga 11828977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 11829137 - 11829082
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  11829137 aaaatgattggtagaccacttatattttcataccacccatacacccccacatattt 11829082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 13922276 - 13922206
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| |||||| ||||  || ||||| ||||||| ||||||||||||||||||||||||||||||    
T  13922276 caaagtgtttgtggggtctaggacacgtgtcacatgtttacgtggaggtttaagtgtgtatgccacctatg 13922206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 13922365 - 13922311
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatatt 269  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  13922365 aaaatgattggtagaccactcatatttccataccactcatacacccccacatatt 13922311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 20186758 - 20186815
Alignment:
Q  213 gaaaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  20186758 gaaaaatgattggtagaccactcatatttccataccactcatacacccccacatattt 20186815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 9672891 - 9672945
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatatt 269  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  9672891 aaaatgattggtagaccactcatatttccataccactcatacacccccacatatt 9672945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 20186849 - 20186919
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| |||| | ||||  || ||||| ||||||||||||||||||||||||||||||||||||||    
T  20186849 caaagtgtttgtgggatctaggacacgtgtcacatgtttatgtggaggtttaagtgtgtatgccacctatg 20186919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 30339727 - 30339657
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| |||||| ||||  || ||||| |||||||||| |||||||||||||||||||||||||||    
T  30339727 caaagtgtttgtggggtctaggacacgtgtcacatgtttatgtagaggtttaagtgtgtatgccacctatg 30339657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 25871756 - 25871704
Alignment:
Q  142 ttgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 194  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  25871756 ttgccacaaaagggtggtataaggtgtattgccacctatggtggtacacctat 25871704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 19151991 - 19152042
Alignment:
Q  143 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 194  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  19151991 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 19152042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 23679050 - 23679101
Alignment:
Q  143 tgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 194  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  23679050 tgccacataagggtggtataaggtgtagtgccacctatggtggtacacctat 23679101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 9673004 - 9673046
Alignment:
Q  331 tgtcatatgtttatgtggaggtttaagtgtgtatgccacctat 373  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  9673004 tgtcacatgtttatgtggaggtttaagtgtgtatgccacctat 9673046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 30339816 - 30339762
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatatt 269  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||    
T  30339816 aaaatgattggtagaccactcatatttttataccactcatacaccctcacatatt 30339762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 51787363 - 51787293
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacctatg 374  Q
    |||||||||| |||||| |||   || ||||| ||||||||||| ||||||||||||||||||||||||||    
T  51787363 caaagtgtttgtggggtctagagcacgtgtcacatgtttatgtgaaggtttaagtgtgtatgccacctatg 51787293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 17224218 - 17224166
Alignment:
Q  142 ttgccacataagggtggtagaaggtgtattgccacctatggtggtatacctat 194  Q
    |||||||| || ||||||| |||||||||||||||||||||||||| ||||||    
T  17224218 ttgccacacaaaggtggtataaggtgtattgccacctatggtggtacacctat 17224166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 38245597 - 38245656
Alignment:
Q  130 ttattaatgacattgccacataagggtggtagaaggtgtattgccacctatggtggtata 189  Q
    |||||||||| ||||||||| |||||||||| ||||||||||||||  || |||||||||    
T  38245597 ttattaatgatattgccacacaagggtggtacaaggtgtattgccatgtacggtggtata 38245656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 51787451 - 51787405
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccc 261  Q
    |||||||||| |||||||||||||||| |||||||| ||||||||||    
T  51787451 aaaatgattggtagaccactcatatttccataccactcatacacccc 51787405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 361
Target Start/End: Original strand, 43740415 - 43740472
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtg 361  Q
    |||||||||| || ||||||||| |||| ||| |||||| ||||||||||||||||||    
T  43740415 caaagtgtttgtgaggtttaggccacatatcacatgtttgtgtggaggtttaagtgtg 43740472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 33594438 - 33594493
Alignment:
Q  215 aaaatgattgatagaccactcatattttcataccacccatacacccccacatattt 270  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||    
T  33594438 aaaatgattggtagaccactcataatttcataccacccatacacccccatatattt 33594493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 370
Target Start/End: Original strand, 33594527 - 33594593
Alignment:
Q  304 caaagtgtttatggggtttaggctacatgtcatatgtttatgtggaggtttaagtgtgtatgccacc 370  Q
    |||||| ||| |||||| ||||| |||||||| |||||| |||| ||||||||||||||||||||||    
T  33594527 caaagtatttgtggggtctaggccacatgtcacatgtttgtgtgaaggtttaagtgtgtatgccacc 33594593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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