View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_high_29 (Length: 383)
Name: NF1158_high_29
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 41747157 - 41747305
Alignment:
| Q |
30 |
ctagtcaggtcttatttatgtgacgttgtttttccaaataaactcatgacgcttgttaatatggaatttggtgcgtccgtataaatagtagatgaaccaa |
129 |
Q |
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| T |
41747157 |
ctagtcaggtcttatttatgtgacgttgtttttccaaataaactcatgacgcttgttaatatggaatttggtgcgtccgtataaatagtagatgaaccaa |
41747256 |
T |
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| Q |
130 |
attgatagctaggatttgatacaatcatagatctgttatattaattcta |
178 |
Q |
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| T |
41747257 |
attgatagctaggatttgatacaatcatagatttgttatattaattcta |
41747305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 41747501 - 41747577
Alignment:
| Q |
170 |
ttaattctatcccatctttacaaaattaacttacaaaagaaacgatatctttcttcataaaaactagtcaagttttg |
246 |
Q |
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| T |
41747501 |
ttaattctatcccatctttacaaaattaacttacaaaagaaaggatatctttcttcataaagactagtcaagttttg |
41747577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 41747610 - 41747674
Alignment:
| Q |
243 |
tttgatttggagaaaatgctccctgcaaagatgactattctcagagtaacgcattcaaaagtttt |
307 |
Q |
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| T |
41747610 |
tttgatttggagaaaatgctccctacaaagatgactattctcagagtaacgcattcaaaagtttt |
41747674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 331 - 371
Target Start/End: Original strand, 41747699 - 41747739
Alignment:
| Q |
331 |
gtaacgcagcaagagaataggaaaagacaagtattgatatt |
371 |
Q |
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| T |
41747699 |
gtaacgcagcaagagaataagaaaagacaagtattgatatt |
41747739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 43003376 - 43003229
Alignment:
| Q |
95 |
atttggtgcgtccgtataaatagtagatgaaccaaattgatagctaggatttgatacaatcatagatctgttatattaattctatcccatctttacaaaa |
194 |
Q |
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| T |
43003376 |
atttggtgtgttagtataaattgtagatggatcaaattgatag----gatttgatatgattatagattttttatatcaaatttatctcatctttacaaaa |
43003281 |
T |
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| Q |
195 |
ttaacttacaaaagaaacgatatctttcttcataaaaactagtcaagttttg |
246 |
Q |
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| T |
43003280 |
ttaacccgtaaaatgaaagatatctttctttataaagactagtcaaattttg |
43003229 |
T |
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