View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1158_high_36 (Length: 354)
Name: NF1158_high_36
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 23 - 325
Target Start/End: Original strand, 2289675 - 2289977
Alignment:
| Q |
23 |
tcagctgtactgttttctttttccaactcaactggtgcctcccctgacagtttttcagcaacaacaggatccaaagatttctcaagaagtttttctgccg |
122 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||||||| ||| || |||||||||||||||||| ||||||| || | || ||||| ||| ||| |
|
|
| T |
2289675 |
tcagctgtaccattttctttctccaattcaactggtgcttcctctttgggtttttcagcaacaacagcgtccaaagcttccacagaaagttgttccaccg |
2289774 |
T |
|
| Q |
123 |
gttccgctattgatatttcttccacttgaggcttttccaattcagctgtactgttttctttttccaactcaactggtgcctcccctgacagtttttcagc |
222 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2289775 |
gttccgccagagatggttcttccacttgaggcttttccaattcagctgttctgttttctttttccaactcaactggtgcctcccctgacagtttttcagc |
2289874 |
T |
|
| Q |
223 |
aacaacaggatccaaagatttctcaagaagtttttctgccggttccgctattgatatttcttccacttgaggcttttccaattgtggcttttcagcaaca |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2289875 |
aacaacaggatccaaagatttctcaagaagttgttctgccggttccgccattgatatttcttccacttgaggcttttccaattgtggcttttcagcaaca |
2289974 |
T |
|
| Q |
323 |
gct |
325 |
Q |
| |
|
||| |
|
|
| T |
2289975 |
gct |
2289977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 2289794 - 2289957
Alignment:
| Q |
1 |
ttccacttgaggcttttccaattcagctgtactgttttctttttccaactcaactggtgcctcccctgacagtttttcagcaacaacaggatccaaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2289794 |
ttccacttgaggcttttccaattcagctgttctgttttctttttccaactcaactggtgcctcccctgacagtttttcagcaacaacaggatccaaagat |
2289893 |
T |
|
| Q |
101 |
ttctcaagaagtttttctgccggttccgctattgatatttcttccacttgaggcttttccaatt |
164 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2289894 |
ttctcaagaagttgttctgccggttccgccattgatatttcttccacttgaggcttttccaatt |
2289957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 2289963 - 2290066
Alignment:
| Q |
215 |
ttttcagcaacaacaggatccaaagatttctcaagaagtttttctgccggttccgctattgatatttcttccacttgaggcttttccaattgtggctttt |
314 |
Q |
| |
|
|||||||||||| | | |||| ||| || ||||||||||||||||| ||||| || || || | |||||||||||||| ||||||||||| || |||| |
|
|
| T |
2289963 |
ttttcagcaacagctgcatccgaagcttcctcaagaagtttttctgttggttctgccatcaatgtgtcttccacttgaggattttccaattgcggttttt |
2290062 |
T |
|
| Q |
315 |
cagc |
318 |
Q |
| |
|
|||| |
|
|
| T |
2290063 |
cagc |
2290066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 2289963 - 2290053
Alignment:
| Q |
74 |
ttttcagcaacaacaggatccaaagatttctcaagaagtttttctgccggttccgctattgatatttcttccacttgaggcttttccaatt |
164 |
Q |
| |
|
|||||||||||| | | |||| ||| || ||||||||||||||||| ||||| || || || | |||||||||||||| |||||||||| |
|
|
| T |
2289963 |
ttttcagcaacagctgcatccgaagcttcctcaagaagtttttctgttggttctgccatcaatgtgtcttccacttgaggattttccaatt |
2290053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University