View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1158_high_37 (Length: 349)
Name: NF1158_high_37
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 33 - 336
Target Start/End: Original strand, 41448035 - 41448338
Alignment:
| Q |
33 |
tggacagccactggaaattttcgtccacgtaatgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctg |
132 |
Q |
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| T |
41448035 |
tggacagccaccggaaattttcgtccacgtaatgtgttaggagaaggtgatttttgatcagtttttaagggttggattgatgagaattcattggctgctg |
41448134 |
T |
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| Q |
133 |
ccaaacctggcactggcattgttattgctatcaaaagacttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaattaatctacttga |
232 |
Q |
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| T |
41448135 |
ccaaacctggcactagcattgttattgctatcaaaagacttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaattaatctacttga |
41448234 |
T |
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| Q |
233 |
ttaaatcatttgctcatcataattaagaagcaaatagtttctctgttacattgttaaataattcaaaaaagaaagtctcaatttgtttagtctcattctt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41448235 |
ttaaatcatttgctcatcataattaagaagcaaatagtttctctgttacattgttaaataattcaaaaaataaagtctcaatttgtttagtctcattctt |
41448334 |
T |
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| Q |
333 |
gttc |
336 |
Q |
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|||| |
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| T |
41448335 |
gttc |
41448338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 29 - 274
Target Start/End: Original strand, 41458405 - 41458646
Alignment:
| Q |
29 |
actctggacagccactggaaattttcgtccacgtaatgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggct |
128 |
Q |
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| T |
41458405 |
actctcgacagccactggaaatttttttccagacaatgtgttaggagaaggtagttttggagcagtttttaagggttggattgatgagaattcattttct |
41458504 |
T |
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| Q |
129 |
gctgccaaacctggcactggcattgttattgctatcaaaagacttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaattaatctac |
228 |
Q |
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| T |
41458505 |
gctgccaaacctggcattggcattgttattgctatcaaaagccttaatcaagaaagcttccgaagtcacagggagtggttggttagtttaata----tac |
41458600 |
T |
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| Q |
229 |
ttgattaaatcatttgctcatcataattaagaagcaaatagtttct |
274 |
Q |
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||| |||||||||||||| | |||||||||||||| ||||||||| |
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| T |
41458601 |
ttgtttaaatcatttgcttttgataattaagaagcagatagtttct |
41458646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 41441659 - 41441814
Alignment:
| Q |
65 |
tgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatc |
164 |
Q |
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| T |
41441659 |
tgtgttaggagaaggtggttttggatcagtttttaagggttggatcgatgagaatacattggttgctgccaaaccgggtactggcatagttattgctgtt |
41441758 |
T |
|
| Q |
165 |
aaaagacttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaat |
220 |
Q |
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| T |
41441759 |
aaaagacttaatcaagaaagcttccagggtcacagggagtggttggtgagtttaat |
41441814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 23827895 - 23828012
Alignment:
| Q |
65 |
tgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatc |
164 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||| | ||||| || |
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| T |
23827895 |
tgtgttaggagatggtgattttggatcagtttttaagggttggattgatgaacattcatcttctgctgcaaaacctggcacaggcattgctgttgctgtc |
23827994 |
T |
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| Q |
165 |
aaaagacttcatcaagat |
182 |
Q |
| |
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|||||||||||||||||| |
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| T |
23827995 |
aaaagacttcatcaagat |
23828012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 23818700 - 23818854
Alignment:
| Q |
65 |
tgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatc |
164 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| | ||||| || |
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| T |
23818700 |
tgtgttaggagatggtgattttggatcagtttttaagggttggattgatgaacgttcatcttctgctgccaaacctggcacaggcattactgttgctgtc |
23818799 |
T |
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| Q |
165 |
aaaagacttcatcaagatggcttacaaggtcacagggagtggttggtgagtttaa |
219 |
Q |
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||||||||| | || |||||| | ||||||||| |||| |||||| ||||||| |
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| T |
23818800 |
aaaagacttaaccaggatggcctcaaaggtcacaatgagttgttggttagtttaa |
23818854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 23823970 - 23824089
Alignment:
| Q |
65 |
tgtgttaggagaaggtggttttggatcagtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatc |
164 |
Q |
| |
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|||||||||||| || | ||||||||||||||||||||| |||||||||| | ||| | ||||||||||||||||||| ||||||| ||||| || |
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| T |
23823970 |
tgtgttaggagatggcgattttggatcagtttttaagggccggattgatgaacactcactttctgctgccaaacctggcacaggcattgccgttgctgtc |
23824069 |
T |
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| Q |
165 |
aaaagacttcatcaagatgg |
184 |
Q |
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||||||||| |||||||||| |
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| T |
23824070 |
aaaagacttaatcaagatgg |
23824089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 23831912 - 23832038
Alignment:
| Q |
93 |
gtttttaagggttggattgatgagaattcattggctgctgccaaacctggcactggcattgttattgctatcaaaagacttcatcaagatggcttacaag |
192 |
Q |
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||||| ||||||||||||||||| | |||| ||||||||||||| |||| ||||||| | |||| ||||||||||| |||| |||||||| ||| |
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| T |
23831912 |
gttttcaagggttggattgatgaacactcatcttctgctgccaaacccggcaaaggcattgctgctgctgtcaaaagactttatcaggatggcttcaaag |
23832011 |
T |
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| Q |
193 |
gtcacagggagtggttggtgagtttaa |
219 |
Q |
| |
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|||||| ||||| ||| || ||||||| |
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| T |
23832012 |
gtcacaaggagttgtttgtaagtttaa |
23832038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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