View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1158_high_38 (Length: 344)

Name: NF1158_high_38
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1158_high_38
NF1158_high_38
[»] chr3 (14 HSPs)
chr3 (175-329)||(39450779-39450939)
chr3 (30-116)||(39450998-39451084)
chr3 (182-329)||(14742115-14742260)
chr3 (182-329)||(39492306-39492455)
chr3 (211-329)||(38216132-38216252)
chr3 (182-326)||(43071704-43071848)
chr3 (212-329)||(49726561-49726680)
chr3 (239-326)||(25189476-25189564)
chr3 (175-247)||(25189640-25189712)
chr3 (215-294)||(864556-864638)
chr3 (290-329)||(38018407-38018446)
chr3 (212-255)||(38018442-38018485)
chr3 (211-294)||(31397484-31397568)
chr3 (175-247)||(39450634-39450706)
[»] chr5 (7 HSPs)
chr5 (182-332)||(13639521-13639673)
chr5 (190-326)||(3577571-3577708)
chr5 (213-329)||(39741426-39741544)
chr5 (182-329)||(5548110-5548259)
chr5 (213-323)||(13361036-13361148)
chr5 (184-332)||(30223807-30223956)
chr5 (214-329)||(14626386-14626503)
[»] scaffold0157 (1 HSPs)
scaffold0157 (182-329)||(21155-21303)
[»] chr8 (10 HSPs)
chr8 (175-332)||(3207633-3207792)
chr8 (175-329)||(20771584-20771740)
chr8 (175-329)||(20781378-20781534)
chr8 (175-323)||(39186167-39186318)
chr8 (227-329)||(38255218-38255322)
chr8 (213-329)||(24587140-24587257)
chr8 (175-332)||(13267808-13267966)
chr8 (175-332)||(32089184-32089343)
chr8 (211-264)||(12739499-12739552)
chr8 (180-326)||(36632798-36632944)
[»] chr4 (14 HSPs)
chr4 (200-329)||(1351426-1351556)
chr4 (182-329)||(12499174-12499322)
chr4 (182-305)||(44363306-44363431)
chr4 (182-329)||(18879109-18879258)
chr4 (177-313)||(49888321-49888455)
chr4 (181-332)||(43365819-43365972)
chr4 (175-260)||(6216420-6216504)
chr4 (200-329)||(36061176-36061307)
chr4 (211-328)||(15562164-15562283)
chr4 (211-329)||(38435136-38435256)
chr4 (276-322)||(44363078-44363124)
chr4 (175-247)||(49888156-49888230)
chr4 (276-332)||(11996306-11996362)
chr4 (175-247)||(18879331-18879403)
[»] chr7 (13 HSPs)
chr7 (175-326)||(37327459-37327612)
chr7 (212-330)||(29366509-29366629)
chr7 (232-328)||(23415960-23416056)
chr7 (212-332)||(20896317-20896441)
chr7 (211-329)||(46303721-46303840)
chr7 (216-329)||(44857872-44857987)
chr7 (196-276)||(39751213-39751293)
chr7 (212-273)||(45871759-45871820)
chr7 (180-250)||(44858056-44858125)
chr7 (178-332)||(3565526-3565682)
chr7 (214-294)||(42457518-42457600)
chr7 (212-291)||(11752908-11752989)
chr7 (213-266)||(17298693-17298746)
[»] chr6 (6 HSPs)
chr6 (182-329)||(6196721-6196870)
chr6 (182-316)||(4837975-4838111)
chr6 (211-329)||(33819855-33819975)
chr6 (196-332)||(10244445-10244583)
chr6 (180-327)||(2236902-2237050)
chr6 (244-329)||(10051521-10051608)
[»] chr1 (11 HSPs)
chr1 (213-332)||(43670853-43670974)
chr1 (180-329)||(15061608-15061757)
chr1 (175-304)||(38275940-38276069)
chr1 (200-297)||(12857462-12857561)
chr1 (180-332)||(7191882-7192036)
chr1 (213-329)||(43344927-43345043)
chr1 (180-273)||(9388813-9388906)
chr1 (211-332)||(26767669-26767792)
chr1 (212-329)||(44166617-44166734)
chr1 (261-329)||(3505161-3505231)
chr1 (231-294)||(43416299-43416364)
[»] chr2 (7 HSPs)
chr2 (184-329)||(35021131-35021277)
chr2 (180-332)||(35695324-35695478)
chr2 (181-326)||(40609684-40609824)
chr2 (215-273)||(1602694-1602752)
chr2 (214-305)||(42006538-42006631)
chr2 (213-266)||(30257329-30257382)
chr2 (276-332)||(43227759-43227815)
[»] scaffold0122 (1 HSPs)
scaffold0122 (182-329)||(17687-17836)
[»] scaffold0062 (2 HSPs)
scaffold0062 (229-329)||(20291-20388)
scaffold0062 (229-329)||(30459-30556)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 175 - 329
Target Start/End: Complemental strand, 39450939 - 39450779
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatac 274  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39450939 gtcctcctatttttatcattatgcaaaattggtccacctattttaaaatttaacaattttggtctctctatcaaatattttgtctaaaatattgtgatac 39450840  T
Q  275 g------atgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    |      |||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  39450839 gataaatatgttttaaatgaagttttcaagagaatttggttacaatttcatagatgttgat 39450779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 39451084 - 39450998
Alignment:
Q  30 tatagtagattctgacaagttcaaattttaagttttggtgtgctcagtagcagctgtaataaggagtactaattcgtctataagacc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39451084 tatagtagattctgacaagttcaaattttaagttttggtgtgctcagtagcagctgtaataaggagtactaattcgtctataagacc 39450998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 182 - 329
Target Start/End: Complemental strand, 14742260 - 14742115
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacgatgttt 281  Q
    |||||| |||||| ||| ||||||| || ||||||||||||||  |||||||||||||||||||||||||||  |||||||||||||||||| | |||||    
T  14742260 tattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatatt--gtctaaaatattgtgatatgttgttt 14742163  T
Q  282 taaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    |||||||| |||||||| |||||| |||||||||| ||||||||||||    
T  14742162 taaatgaagttttcaagggaatttcgttacaattttatcgatgttgat 14742115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 182 - 329
Target Start/End: Original strand, 39492306 - 39492455
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgt 279  Q
    |||||| |||||| ||||||||||| || |||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||    
T  39492306 tattttcatcattttgcaaaattggtccccctattataaaattcgacaatgttggtccctctatcaaatattttgtctaaaatattgtgatatgatatgt 39492405  T
Q  280 tttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    || ||||||| |||||||| |||||| ||||||| |||||| ||||||||    
T  39492406 ttcaaatgaagttttcaagggaattttgttacaacttcatcaatgttgat 39492455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 38216132 - 38216252
Alignment:
Q  211 cctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggt 308  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||| |  ||||||||||| || ||||||||||||||| ||    
T  38216132 cctattttaaaattcgacaattttggtcgctctatcaaatattttgtctaaaatattgtgatatgatatgttttaaataaagttttcaagagaattttgt 38216231  T
Q  309 tacaatttcatcgatgttgat 329  Q
    ||||||||||| |||||||||    
T  38216232 tacaatttcattgatgttgat 38216252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 182 - 326
Target Start/End: Complemental strand, 43071848 - 43071704
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgt 279  Q
    ||||||||||||| ||  ||||||| ||| |||||||||||||  ||||||||||||| |||||||||||  |||||||||||||||||||| |  ||||    
T  43071848 tatttttatcattttgtgaaattggtccatctattttaaaattcgacaattttggtccttctatcaaata--ttgtctaaaatattgtgatatgatatgt 43071751  T
Q  280 tttaaatgaaattttcaagagaatttggttacaatttcatcgatgtt 326  Q
    |||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  43071750 tttaaacgaagttttcaagagaattttgttacaatttcatcgatgtt 43071704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 329
Target Start/End: Complemental strand, 49726680 - 49726561
Alignment:
Q  212 ctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacgatgt--tttaaatgaaattttcaagagaatttggtt 309  Q
    ||||||||| |||| | |||||||||| ||||||||||||||||||  | |||||||||||| ||| |  |||||||||| ||||||||| ||||| |||    
T  49726680 ctattttaatatttgataattttggtctctctatcaaatattttgtacagaatattgtgatatgatatattttaaatgaagttttcaagaaaattttgtt 49726581  T
Q  310 acaatttcatcgatgttgat 329  Q
    ||||||||||||||||||||    
T  49726580 acaatttcatcgatgttgat 49726561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 326
Target Start/End: Original strand, 25189476 - 25189564
Alignment:
Q  239 cctctatcaaatattttgtctaaaatattgtgatacgat--gttttaaatgaaattttcaagagaatttggttacaatttcatcgatgtt 326  Q
    ||||||||  |||||||||||||| ||||||||||  ||  |||||||||||| ||||||||||||||| |||||||||| ||| |||||    
T  25189476 cctctatcccatattttgtctaaa-tattgtgatataatatgttttaaatgaagttttcaagagaatttcgttacaattttatcaatgtt 25189564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 25189712 - 25189640
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatca 247  Q
    |||| |||||||||| |||| |||| |||||| || |||||||||||||| |||| |||||||||||| ||||    
T  25189712 gtccccctatttttaccattttgcagaattggtccccctattttaaaattcaacagttttggtccctccatca 25189640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 294
Target Start/End: Complemental strand, 864638 - 864556
Alignment:
Q  215 ttttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaa-tgaaatttt 294  Q
    ||||||||||| |||| ||||||||||| |||||||| || ||||||||||| |||||| |  |||||||||| |||||||||    
T  864638 ttttaaaatttgacaaatttggtccctcgatcaaataattagtctaaaatatagtgatatgacatgttttaaattgaaatttt 864556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 38018446 - 38018407
Alignment:
Q  290 attttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  38018446 attttcaagggaattttgttacaatttcatcgatgttgat 38018407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 38018485 - 38018442
Alignment:
Q  212 ctattttaaaatttaacaattttggtccctctatcaaatatttt 255  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||    
T  38018485 ctattttaaaatttgacaattttggtccctatattaaatatttt 38018442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 31397568 - 31397484
Alignment:
Q  211 cctattttaaaatttaacaattttggtccctcta-tcaaatattttgtctaaaatattgtgatacgatgttttaaatgaaatttt 294  Q
    |||||||||||| |||||| |||||||| ||||| | |||||||| || |||||||| |||||   |||||||||| ||| ||||    
T  31397568 cctattttaaaagttaacatttttggtctctctatttaaatatttggtttaaaatatggtgattacatgttttaaacgaactttt 31397484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 39450634 - 39450706
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatca 247  Q
    |||| |||||||| | |||| |||| |||||| || ||||||||||||||| ||| ||||| |||||| ||||    
T  39450634 gtccccctattttcaccattttgcagaattggtccccctattttaaaatttgacagttttgatccctccatca 39450706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 182 - 332
Target Start/End: Complemental strand, 13639673 - 13639521
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgt 279  Q
    |||||| |||||| ||||||||||| || ||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||||||| |  ||||    
T  13639673 tattttcatcattttgcaaaattggtccccctattttaaaattctaaaattttggtccctctatcatatattttgtctaaaatattgtgatatgatatgt 13639574  T
Q  280 tttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    |||||||||| |||| ||||| |||| |||||||||| |||||||||||||||    
T  13639573 tttaaatgaagtttttaagagcattttgttacaattttatcgatgttgatatt 13639521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 190 - 326
Target Start/End: Original strand, 3577571 - 3577708
Alignment:
Q  190 tcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatg 287  Q
    ||||| ||||||||||| |  ||||||||||||||  ||||||||||| |||||||||||||||||||||||||| |||||||| |  ||||||||||||    
T  3577571 tcattttgcaaaattggtcttcctattttaaaattcgacaattttggtacctctatcaaatattttgtctaaaattttgtgatatgatatgttttaaatg 3577670  T
Q  288 aaattttcaagagaatttggttacaatttcatcgatgtt 326  Q
    || |||||||| |||||| ||||||||||||||||||||    
T  3577671 aagttttcaag-gaattttgttacaatttcatcgatgtt 3577708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 213 - 329
Target Start/End: Complemental strand, 39741544 - 39741426
Alignment:
Q  213 tattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggtta 310  Q
    ||||||||||||  | ||||||| ||||||||||||||||||||||||||||||||||||| |  |||||||||||||| |||||||| |||||| ||||    
T  39741544 tattttaaaattcgataattttgatccctctatcaaatattttgtctaaaatattgtgatatgatatgttttaaatgaagttttcaagggaatttcgtta 39741445  T
Q  311 caatttcatcgatgttgat 329  Q
     ||||||||||||||||||    
T  39741444 taatttcatcgatgttgat 39741426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 182 - 329
Target Start/End: Original strand, 5548110 - 5548259
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgt 279  Q
    ||||||||| ||| ||  ||||||| ||  |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| |||  |  ||||    
T  5548110 tatttttattattttgttaaattggtccctctattttaaaattcgacaattttggtccctttatcaaatattttgtctaaaatattgagatgtgatatgt 5548209  T
Q  280 tttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    ||||||||||||||| |||| ||||| | |||||||||||||||||||||    
T  5548210 tttaaatgaaatttttaagaaaattttgatacaatttcatcgatgttgat 5548259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 213 - 323
Target Start/End: Original strand, 13361036 - 13361148
Alignment:
Q  213 tattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggtta 310  Q
    ||||||||||||  ||||||||| || |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| ||  |||||| ||||    
T  13361036 tattttaaaattcgacaattttgatctctctatcacatattttgtctaaaatattgtgatacgatatgttttaaatgaaatttttaaaggaattttgtta 13361135  T
Q  311 caatttcatcgat 323  Q
    |||||||||||||    
T  13361136 caatttcatcgat 13361148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 184 - 332
Target Start/End: Original strand, 30223807 - 30223956
Alignment:
Q  184 tttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgata-cgatgtttt 282  Q
    |||| |||||| ||| ||||||| ||  | ||||| |||||  ||| ||||||||| ||||||||||||||||||||||||||||| ||| | |||||||    
T  30223807 ttttcatcattttgcgaaattggtccctcaatttttaaattcgacagttttggtccatctatcaaatattttgtctaaaatattgttatatcaatgtttt 30223906  T
Q  283 aaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    ||||||| |||||||  |||||| |||||||||||||| ||||| |||||    
T  30223907 aaatgaagttttcaatggaattttgttacaatttcatccatgttaatatt 30223956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 329
Target Start/End: Complemental strand, 14626503 - 14626386
Alignment:
Q  214 attttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggttac 311  Q
    ||||||||||   ||||||||| | ||||||||| ||||||||||||||||| ||||||| |  |||||||||||||| |||| ||  |||||| ||||     
T  14626503 attttaaaatccgacaattttgattcctctatcacatattttgtctaaaatactgtgatatgatatgttttaaatgaagtttttaaaggaattttgttat 14626404  T
Q  312 aatttcatcgatgttgat 329  Q
    ||||||||||||||||||    
T  14626403 aatttcatcgatgttgat 14626386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 182 - 329
Target Start/End: Original strand, 21155 - 21303
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacgat-gtt 280  Q
    |||||| || ||| ||| ||||||| || ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| || |||  ||    
T  21155 tattttaataattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtctaaaatattgtggtatgatattt 21254  T
Q  281 ttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    ||||||||| |||||||| |||||| ||||||||||||| |||||||||    
T  21255 ttaaatgaagttttcaagggaattttgttacaatttcattgatgttgat 21303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 175 - 332
Target Start/End: Original strand, 3207633 - 3207792
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatac 274  Q
    |||||| |||||| |||||| | ||||||||| |   |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||     
T  3207633 gtcctcatattttcatcattttacaaaattggtctctctattttaaaattcgacaattttagtccctctatcaaatattttgtctaaaatattgtgatat 3207732  T
Q  275 g--atgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    |  |||||||||||||| |||||||   ||||| ||||||||||||||||||||||||||    
T  3207733 gatatgttttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatt 3207792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 175 - 329
Target Start/End: Complemental strand, 20771740 - 20771584
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatac 274  Q
    |||| |||||||| |||||| ||||||||||| ||  |||||||||||||||||| ||||||| ||||||||||| |  ||||||||||||||||||||     
T  20771740 gtccccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggttcctctatcaaaaaaattgtctaaaatattgtgatat 20771641  T
Q  275 g--atgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    |  ||||||||||||||  | ||||| | |||| |||| ||||||||||||||||||    
T  20771640 gatatgttttaaatgaagctatcaaggggattttgttataatttcatcgatgttgat 20771584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 175 - 329
Target Start/End: Complemental strand, 20781534 - 20781378
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatac 274  Q
    |||| |||||||| |||||| ||||||||||| ||  |||||||||||||||||| ||||||| ||||||||||| |  ||||||||||||||||||||     
T  20781534 gtccccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggttcctctatcaaaaaaattgtctaaaatattgtgatat 20781435  T
Q  275 g--atgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    |  ||||||||||||||  | ||||| | |||| |||| ||||||||||||||||||    
T  20781434 gatatgttttaaatgaagctatcaaggggattttgttataatttcatcgatgttgat 20781378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 39186167 - 39186318
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaattta-acaattttggtccctctatcaaatattttgtctaaaatattgtgata 273  Q
    ||||||||||||| |||||| ||||||||||| || |||||||||||| ||  ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  39186167 gtcctcctattttcatcattttgcaaaattggtccccctattttaaaacttcgacaattttgatccctctatcacatattttgtctaaaatattgtgata 39186266  T
Q  274 --cgatgttttaaatgaaattttcaagagaatttggttacaatttcatcgat 323  Q
        |||||||||||||| |||| ||   ||||| |||||||||||||||||    
T  39186267 tcatatgttttaaatgaagtttttaaagaaattttgttacaatttcatcgat 39186318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 38255218 - 38255322
Alignment:
Q  227 acaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggttacaatttcatcgatg 324  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| |  |||||||||||||||||||| ||  ||||| |||||||||| |||||||    
T  38255218 acaattttggtccctctatcaaatatttgttctaaaatattgtgatatgatatgttttaaatgaaattttctaggaaatttcgttacaattttatcgatg 38255317  T
Q  325 ttgat 329  Q
     ||||    
T  38255318 gtgat 38255322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 329
Target Start/End: Original strand, 24587140 - 24587257
Alignment:
Q  213 tattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggtta 310  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||| || ||||| |  ||||||||||| ||  |||||||  || || ||||    
T  24587140 tattttaaaattcgacaattttggtccctctatcaaatattttgtctaaaatgttatgatatgatatgttttaaat-aatgtttcaaggaaagtttgtta 24587238  T
Q  311 caatttcatcgatgttgat 329  Q
    |||||||||||||||||||    
T  24587239 caatttcatcgatgttgat 24587257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 332
Target Start/End: Original strand, 13267808 - 13267966
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtg--at 272  Q
    |||| ||||||||||  ||| || |||||||| || ||||||||||||||  ||| ||||||||||||| || |||||||||| |||||||| |||  ||    
T  13267808 gtccccctatttttactattttgtaaaattggtcc-cctattttaaaattcgacagttttggtccctctttctaatattttgtttaaaatatggtgatat 13267906  T
Q  273 acgatgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    |  |||||||||||||| |||||||  ||||||  |||  ||||||| ||||||||||||    
T  13267907 aacatgttttaaatgaagttttcaaaggaattttcttatgatttcattgatgttgatatt 13267966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 332
Target Start/End: Complemental strand, 32089343 - 32089184
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatac 274  Q
    |||| |||||||| ||| || ||  ||||||| || |||||||| || ||  ||| |||||||| ||||||| |||| ||||||| |||||| ||||||     
T  32089343 gtccccctattttcatctttttgtgaaattggtccccctattttgaagttcgacagttttggtctctctatctaataatttgtcttaaatatggtgatat 32089244  T
Q  275 ga--tgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
     |  ||||||||||||| |||| | || |||||  |||| |||||||| |||||||||||    
T  32089243 aacatgttttaaatgaagtttttatgaaaattttattacgatttcatcaatgttgatatt 32089184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 12739499 - 12739552
Alignment:
Q  211 cctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaat 264  Q
    |||| ||||| |||||||| |||||||||||||||| |||||||  ||||||||    
T  12739499 cctaatttaatatttaacagttttggtccctctatcgaatatttgatctaaaat 12739552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 36632944 - 36632798
Alignment:
Q  180 cctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacgatgt 279  Q
    |||||||||| |||| |||| |||||  ||   ||||||||| ||  ||| ||||| |||||||||||| ||||||||||||| |||||  ||| ||| |    
T  36632944 cctatttttaccattctgcagaattgatccctatattttaaagttcgacagttttgatccctctatcaa-tattttgtctaaa-tattgatatatgattt 36632847  T
Q  280 --tttaaatgaaattttcaagagaatttggttacaatttcatcgatgtt 326  Q
      ||| || ||| |||||||  |||||| ||||||||||||||||||||    
T  36632846 gattttaaagaagttttcaaaggaattttgttacaatttcatcgatgtt 36632798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 329
Target Start/End: Complemental strand, 1351556 - 1351426
Alignment:
Q  200 aaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacga--tgttttaaatgaaattttcaa 297  Q
    ||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||  ||||||||||||| |||||||    
T  1351556 aaattggtcctcctattttaaaattcaacaattttggtccctctatcaaata-tttgtctaaaatattgtgatatgatttgttttaaatgaatttttcaa 1351458  T
Q  298 gagaatttggttacaatttcatcgatgttgat 329  Q
    |  ||||| |||||||||||||||||||||||    
T  1351457 ggaaattttgttacaatttcatcgatgttgat 1351426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 182 - 329
Target Start/End: Complemental strand, 12499322 - 12499174
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacgat-gtt 280  Q
    |||||| || ||| ||| ||||||| || ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| || |||  ||    
T  12499322 tattttaataattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtctaaaatattgtggtatgatattt 12499223  T
Q  281 ttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    ||||||||| |||||||| |||||| ||||||||||||| |||||||||    
T  12499222 ttaaatgaagttttcaagggaattttgttacaatttcattgatgttgat 12499174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 182 - 305
Target Start/End: Complemental strand, 44363431 - 44363306
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgt 279  Q
    |||||| |||||| ||| ||||||| || ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| |  ||||    
T  44363431 tattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctataaaatattttgtctaaaatattgtgatatgatatgt 44363332  T
Q  280 tttaaatgaaattttcaagagaattt 305  Q
    |||||||||| |||||||| ||||||    
T  44363331 tttaaatgaagttttcaagggaattt 44363306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 329
Target Start/End: Original strand, 18879109 - 18879258
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgt 279  Q
    |||||| || ||| |||||||| || |  |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||| |  ||||    
T  18879109 tattttaattattttgcaaaatcggtcgccctattttaaaattcaacaattttggtcactctataaaatattttgtctaaaatactgtgatatgatatgt 18879208  T
Q  280 tttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    |||||||||| || |||||  || || |||||||||||||||||||||||    
T  18879209 tttaaatgaagttatcaaggaaaatttgttacaatttcatcgatgttgat 18879258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 313
Target Start/End: Complemental strand, 49888455 - 49888321
Alignment:
Q  177 cctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg- 275  Q
    |||||||||||||||||| |||||||||||  | ||||||||||||||| | |||||| || ||||||||||||| ||||||||    ||||||||| |     
T  49888455 cctcctatttttatcattttgcaaaattggttcccctattttaaaatttgataatttttgttcctctatcaaatactttgtcta----attgtgatatga 49888360  T
Q  276 -atgttttaaatgaaattttcaagagaatttggttacaa 313  Q
     |||||||||||||| ||||||||||||||| |||||||    
T  49888359 tatgttttaaatgaagttttcaagagaattttgttacaa 49888321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 181 - 332
Target Start/End: Original strand, 43365819 - 43365972
Alignment:
Q  181 ctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtga--tacgatg 278  Q
    ||||||||| |||| ||||||||||| || | ||||||||||||  ||| ||||||| |||||||| |||||||||||||||||||  |||  ||  |||    
T  43365819 ctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatgatgatgtaacatg 43365918  T
Q  279 ttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    ||||||||||| |||| ||| ||||||  |||| |||||||||||||| |||||    
T  43365919 ttttaaatgaagtttttaagggaattttcttacgatttcatcgatgtttatatt 43365972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 6216504 - 6216420
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtcta 260  Q
    |||||||||||||||||||| ||||||||||  || ||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  6216504 gtcctcctatttttatcattttgcaaaattgttcc-cctattttaaaatttgacaactttggtccctctatcaaatattttgtcta 6216420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 329
Target Start/End: Complemental strand, 36061307 - 36061176
Alignment:
Q  200 aaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaa 297  Q
    ||||||| || ||||||||||||||  ||||||||||| ||||||||||| | ||| ||||||||||||||||| |  ||||||||||| ||| ||| ||    
T  36061307 aaattggtccccctattttaaaattggacaattttggttcctctatcaaaaaatttatctaaaatattgtgatatgatatgttttaaataaaaattttaa 36061208  T
Q  298 gagaatttggttacaatttcatcgatgttgat 329  Q
      |||||| ||| |||||| || |||||||||    
T  36061207 aggaattttgttgcaattttattgatgttgat 36061176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 328
Target Start/End: Original strand, 15562164 - 15562283
Alignment:
Q  211 cctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtg--atacgatgttttaaatgaaattttcaagagaatttggt 308  Q
    ||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||  |||  |||  ||||||||| |||| |||| ||  ||||||  |    
T  15562164 cctattttaaaatttgacagttttggtccctctatctaataatttgtctaaaatacagtgatataacatgttttaattgaagtttttaaatgaattttct 15562263  T
Q  309 tacaatttcatcgatgttga 328  Q
    ||| |||||||| |||||||    
T  15562264 tacgatttcatcaatgttga 15562283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 38435136 - 38435256
Alignment:
Q  211 cctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgt--gatacgatgttttaaatgaaattttcaagagaatttggt 308  Q
    ||||||||||||||| ||| |||||||||||| | ||||| ||| ||||||||||| ||   |||  ||||||||||| ||||||| ||||   |||  |    
T  38435136 cctattttaaaatttgacagttttggtccctccaccaaatgtttggtctaaaatatggtaatataacatgttttaaataaaatttttaagatttttttct 38435235  T
Q  309 tacaatttcatcgatgttgat 329  Q
    ||||||||||| |||||||||    
T  38435236 tacaatttcattgatgttgat 38435256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 44363124 - 44363078
Alignment:
Q  276 atgttttaaatgaaattttcaagagaatttggttacaatttcatcga 322  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||    
T  44363124 atgttttaaatgaagttttcaagggaattttgttacaatttcatcga 44363078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 49888156 - 49888230
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattt--taaaatttaacaattttggtccctctatca 247  Q
    |||||||||||||||||||| ||||  ||||| || |||||||  |||||||  |||||| ||||||||||||||    
T  49888156 gtcctcctatttttatcattttgcaggattggtcctcctattttataaaattctacaattgtggtccctctatca 49888230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 11996362 - 11996306
Alignment:
Q  276 atgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    ||||||||||| ||||||||||||||||||  |||| |||| |||||| || |||||    
T  11996362 atgttttaaataaaattttcaagagaatttttttacgattttatcgattttcatatt 11996306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 18879403 - 18879331
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatca 247  Q
    |||| |||||||| | |||| |||| |||||  || |||| |||||||||| |||||||||||||||| ||||    
T  18879403 gtccccctattttcaccattttgcataattgatccccctaatttaaaatttgacaattttggtccctccatca 18879331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 175 - 326
Target Start/End: Complemental strand, 37327612 - 37327459
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatac 274  Q
    |||||||  |||| |||||| ||| ||||||| || ||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||     
T  37327612 gtcctccacttttcatcattttgcgaaattggtccccctattttaaaattggacaattttggtccctctatcaaattttttgtctaaaatattgtgatat 37327513  T
Q  275 g--atgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgtt 326  Q
    |  || ||||||||||| ||||||||||||||| ||| |||||| |||||||||    
T  37327512 gatatattttaaatgaagttttcaagagaattttgttgcaattttatcgatgtt 37327459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 330
Target Start/End: Complemental strand, 29366629 - 29366509
Alignment:
Q  212 ctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggtt 309  Q
    ||||||||| |||| ||||||||||||  ||||||||||||||||||||||||||||||||| |  ||||||||||| || ||||||| | ||||| |||    
T  29366629 ctattttaatatttgacaattttggtcattctatcaaatattttgtctaaaatattgtgatatgatatgttttaaataaagttttcaacataattttgtt 29366530  T
Q  310 acaatttcatcgatgttgata 330  Q
    |||||||||||||||||||||    
T  29366529 acaatttcatcgatgttgata 29366509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 23415960 - 23416056
Alignment:
Q  232 tttggtccctctatcaaatattttgtctaaaatattgtgatacgatgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttga 328  Q
    ||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||| ||||| |||| |||||||||||||||||    
T  23415960 tttggtccctcaatcaaatattttgtctaaaatactgtgatatgatgttttaaatgaagtttttaagaaaattttgttataatttcatcgatgttga 23416056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 212 - 332
Target Start/End: Original strand, 20896317 - 20896441
Alignment:
Q  212 ctattttaaaatttaacaattttggtccctctatcaaatat--tttgtctaaaatattgtgatacgat--gttttaaatgaaattttcaagagaatttgg 307  Q
    |||||||||||||  | ||||||||||||||||||| ||||  ||||||||||||||||||||| |||  |||||||||||| |||| ||   ||||| |    
T  20896317 ctattttaaaattcgataattttggtccctctatcacatataatttgtctaaaatattgtgatatgatatgttttaaatgaagtttttaaagaaattttg 20896416  T
Q  308 ttacaatttcatcgatgttgatatt 332  Q
    |||||||||||||||||||||||||    
T  20896417 ttacaatttcatcgatgttgatatt 20896441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 329
Target Start/End: Complemental strand, 46303840 - 46303721
Alignment:
Q  211 cctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggt 308  Q
    ||||||||||||||  ||||||||||||||||||||| || |||| ||||||||||||||||  |  |||||||||||||| |||| |||| ||||| ||    
T  46303840 cctattttaaaattcgacaattttggtccctctatcatatgttttatctaaaatattgtgatgtgatatgttttaaatgaagtttt-aagataattttgt 46303742  T
Q  309 tacaatttcatcgatgttgat 329  Q
    |||| ||||||||||||||||    
T  46303741 tacagtttcatcgatgttgat 46303721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 44857872 - 44857987
Alignment:
Q  216 tttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggttacaa 313  Q
    |||||||||  ||||||||| |||||| ||||||||||| |||||||||||||||||  |  |||||||||||||| ||||||||  ||||| ||||||     
T  44857872 tttaaaattcgacaattttgttccctccatcaaatatttagtctaaaatattgtgatttgatatgttttaaatgaagttttcaaggaaattttgttacag 44857971  T
Q  314 tttcatcgatgttgat 329  Q
    ||| |||||| |||||    
T  44857972 ttttatcgatcttgat 44857987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 39751213 - 39751293
Alignment:
Q  196 tgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacga 276  Q
    ||||||||||| || || |||||||||||  ||||||||||||| || |||||||||||||| |||||||| |||||||||    
T  39751213 tgcaaaattggtccccccattttaaaattctacaattttggtccttccatcaaatattttgtttaaaatatggtgatacga 39751293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 45871759 - 45871820
Alignment:
Q  212 ctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgata 273  Q
    ||||||||||||| |||| |||||||||||||||  ||||||||||||||||||| ||||||    
T  45871759 ctattttaaaattcaacagttttggtccctctatataatattttgtctaaaatatggtgata 45871820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 44858125 - 44858056
Alignment:
Q  180 cctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaat 250  Q
    |||||||||| |||| |||||||| || || ||||||||||||||| ||| ||||||||||||||||||||    
T  44858125 cctatttttaccattttgcaaaat-ggtccccctattttaaaatttgacagttttggtccctctatcaaat 44858056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 3565682 - 3565526
Alignment:
Q  178 ctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtg--atacg 275  Q
    |||||||||| |  ||| |||||||||||    ||| ||||| ||||  ||| |||||| ||||||||| ||||||||||||||||||| |||  |||      
T  3565682 ctcctattttcactattttgcaaaattggtttccctgttttataattcgacagttttggaccctctatctaatattttgtctaaaatatggtgatataac 3565583  T
Q  276 atgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    |||||||||||||| |||||||   |||||   ||  ||||||||||||||||||||    
T  3565582 atgttttaaatgaagttttcaatgtaattttcctatgatttcatcgatgttgatatt 3565526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 42457600 - 42457518
Alignment:
Q  214 attttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaatttt 294  Q
    |||||||| ||  ||||||||||| | ||||||| ||||||||| |||||||||| |||| |  |||||| ||||||||||||    
T  42457600 attttaaacttcgacaattttggttcttctatcatatattttgtataaaatattgagatatgatatgtttaaaatgaaatttt 42457518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 11752989 - 11752908
Alignment:
Q  212 ctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtg--atacgatgttttaaatgaaat 291  Q
    |||||||||||||| ||||||  | ||| || ||||||||||||||||||| ||| |||  |||  ||||||||||||||||    
T  11752989 ctattttaaaatttgacaattcagatccatccatcaaatattttgtctaaattatagtgatataacatgttttaaatgaaat 11752908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 17298693 - 17298746
Alignment:
Q  213 tattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatat 266  Q
    ||||||||||||| |||| | || || ||||||||||||||| |||||||||||    
T  17298693 tattttaaaatttgacaactctgatctctctatcaaatatttggtctaaaatat 17298746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 182 - 329
Target Start/End: Original strand, 6196721 - 6196870
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgt 279  Q
    |||||| |||||| | | ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |  || |    
T  6196721 tattttcatcattttacgaaattggtccccctattttaaaattcaacaattttggtccctctatcaaatattttgtctaaaatattgtgatatgttatat 6196820  T
Q  280 tttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    |||||||||| |||||||| |||||| |||| ||||||||  ||||||||    
T  6196821 tttaaatgaagttttcaagggaatttcgttataatttcattaatgttgat 6196870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 182 - 316
Target Start/End: Complemental strand, 4838111 - 4837975
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgt 279  Q
    |||||| |||||| ||| ||||||| || |||||||||||| || ||||||||||||| ||||||||||||||||| ||||||||||||||| |  ||||    
T  4838111 tattttcatcattttgcgaaattggtccccctattttaaaagttgacaattttggtccatctatcaaatattttgtttaaaatattgtgatatgatatgt 4838012  T
Q  280 tttaaatgaaattttcaagagaatttggttacaattt 316  Q
    |||||||||| |||||||  |||||| ||||||||||    
T  4838011 tttaaatgaagttttcaaatgaattttgttacaattt 4837975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 33819855 - 33819975
Alignment:
Q  211 cctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggt 308  Q
    ||||||||||||||   |||||||| | | |||||||||||||||||||||||||||||||||||  |||||||||||||| |||| ||| ||||||  |    
T  33819855 cctattttaaaattcggcaattttgtttcatctatcaaatattttgtctaaaatattgtgatacgatatgttttaaatgaagtttttaagggaattttat 33819954  T
Q  309 tacaatttcatcgatgttgat 329  Q
    ||||||||||||||| |||||    
T  33819955 tacaatttcatcgatattgat 33819975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 332
Target Start/End: Complemental strand, 10244583 - 10244445
Alignment:
Q  196 tgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatat--tgtgatacgatgttttaaatgaaattt 293  Q
    ||||||||||| || ||||||||||||||| ||| ||||||| ||| |||||  |||||||||||||||||  ||  |||  |||||||||||||| |||    
T  10244583 tgcaaaattggtccccctattttaaaatttgacagttttggttcctatatcatttattttgtctaaaatatgatgatataacatgttttaaatgaagttt 10244484  T
Q  294 tcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    | |||  | |||  |||| ||||||||||||||||||||    
T  10244483 ttaaggaagttttcttacgatttcatcgatgttgatatt 10244445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 180 - 327
Target Start/End: Complemental strand, 2237050 - 2236902
Alignment:
Q  180 cctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--at 277  Q
    |||||||| |||||| ||| ||||||| || | || ||| |||||| | ||||||| ||||||||||| ||||||||||||||||||| ||||| |  ||    
T  2237050 cctattttcatcattttgcgaaattggtccccataattttaaattttataattttgatccctctatcacatattttgtctaaaatattatgatatgatat 2236951  T
Q  278 gttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttg 327  Q
     ||||||||||| |||| |||| | |||  ||||||||| ||||||||||    
T  2236950 attttaaatgaagtttttaaga-attttttttacaattttatcgatgttg 2236902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 10051521 - 10051608
Alignment:
Q  244 atcaaatattttgtctaaaatattgtgatacgatgt--tttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    |||||||| ||  |||||||||| |||||| || ||  ||||||||||||||||||| ||| ||   ||||||||||| |||||||||    
T  10051521 atcaaatacttgatctaaaatatggtgatatgacgtgctttaaatgaaattttcaagggaagttttatacaatttcattgatgttgat 10051608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 213 - 332
Target Start/End: Complemental strand, 43670974 - 43670853
Alignment:
Q  213 tattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatac--gatgttttaaatgaaattttcaagagaatttggtta 310  Q
    ||||||||||||  ||||||||| ||||||||| | ||||||||||||||||||||||||||   ||||||| |||||| |||| ||| |||||| ||||    
T  43670974 tattttaaaattcgacaattttgatccctctattacatattttgtctaaaatattgtgatactatatgtttttaatgaagtttttaagggaattttgtta 43670875  T
Q  311 caatttcatcgatgttgatatt 332  Q
    ||||||||||||||||||||||    
T  43670874 caatttcatcgatgttgatatt 43670853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 180 - 329
Target Start/End: Complemental strand, 15061757 - 15061608
Alignment:
Q  180 cctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacgat-- 277  Q
    ||||||||||||||| ||||||||||| |  ||||||||| |||| | ||||||||||| |||| |||||||||| ||||| |||||||||||| |||      
T  15061757 cctatttttatcattttgcaaaattggtctccctattttagaattga-caattttggtctctctgtcaaatattt-gtctagaatattgtgatatgatat 15061660  T
Q  278 gttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    |||||||||||| |||| |||  ||||| |||||||||||||||||||||||    
T  15061659 gttttaaatgaagtttttaaggaaattttgttacaatttcatcgatgttgat 15061608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 38276069 - 38275940
Alignment:
Q  175 gtcctcctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatac 274  Q
    |||| ||||||| ||||||| ||| ||||||| ||   |||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||     
T  38276069 gtccccctatttatatcattttgcgaaattggtcct--tattttaaaattcaacaattttggtccctttatcaaatatgttgtctaaaatattgtgatat 38275972  T
Q  275 g--atgttttaaatgaaattttcaagagaatt 304  Q
    |  |||||||||||||| |||||||| |||||    
T  38275971 gatatgttttaaatgaagttttcaagggaatt 38275940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 297
Target Start/End: Complemental strand, 12857561 - 12857462
Alignment:
Q  200 aaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaa 297  Q
    ||||||| || ||||||||||||||  |||||||||||| ||||||||||| ||||||||| |||||||||||| |  |||||||||||||| |||||||    
T  12857561 aaattggtcctcctattttaaaattggacaattttggtctctctatcaaattttttgtctagaatattgtgatatgatatgttttaaatgaagttttcaa 12857462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 7191882 - 7192036
Alignment:
Q  180 cctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtg--atacgat 277  Q
    |||||||| |||||| ||| |||| || || | ||||||||||||  ||| ||||||||||| |||| || |||||||||||||||| |||  |||  ||    
T  7191882 cctattttaatcattttgccaaataggtccccatattttaaaattcgacagttttggtccctttatctaaaattttgtctaaaatatggtgatataacat 7191981  T
Q  278 gttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    |||||||||| | |||||||  |||||   |||| ||||||||||||||||||||    
T  7191982 gttttaaatggagttttcaaaggaattattttacgatttcatcgatgttgatatt 7192036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 329
Target Start/End: Complemental strand, 43345043 - 43344927
Alignment:
Q  213 tattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacgat--gttttaaatgaaattttcaagagaatttggtta 310  Q
    ||||||||||||  |||||||| |||||| ||| |||||||  |||||||||||||||||| |||  |||||||||||| |||| || | || || ||||    
T  43345043 tattttaaaattcgacaattttagtccctatatgaaatatt--gtctaaaatattgtgatatgatatgttttaaatgaagtttttaaaaaaaatttgtta 43344946  T
Q  311 caatttcatcgatgttgat 329  Q
    ||||||||| |||||||||    
T  43344945 caatttcattgatgttgat 43344927  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 273
Target Start/End: Original strand, 9388813 - 9388906
Alignment:
Q  180 cctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgata 273  Q
    |||||||||||| || || |||||||| || ||||||||||||||  |||||||| |||||||||||  | ||||||| |||||||| ||||||    
T  9388813 cctatttttatctttttgtaaaattggtccccctattttaaaattcgacaattttagtccctctatctcaaattttgtttaaaatatggtgata 9388906  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 332
Target Start/End: Original strand, 26767669 - 26767792
Alignment:
Q  211 cctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatat--tgtgatacgatgttttaaatgaaattttcaagagaatttggt 308  Q
    ||||||||||||||| ||| |||||||||||||||   ||||||||||||||||||  ||  |||  ||||| |||||||| |||| |||| | |||  |    
T  26767669 cctattttaaaatttgacagttttggtccctctatattatattttgtctaaaatatgatgatataacatgttctaaatgaagtttttaagaaagttttct 26767768  T
Q  309 tacaatttcatcgatgttgatatt 332  Q
    ||  |||| |||||||||||||||    
T  26767769 tatgattttatcgatgttgatatt 26767792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 329
Target Start/End: Complemental strand, 44166734 - 44166617
Alignment:
Q  212 ctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaatttggtt 309  Q
    |||||||||||||  ||||||||| ||| | |||||| | |||||||||||||||||||||| |  ||||||||||| || |||| ||| |||||| |||    
T  44166734 ctattttaaaattggacaattttgatcc-tgtatcaatttttttgtctaaaatattgtgatatgatatgttttaaataaagtttttaagggaattttgtt 44166636  T
Q  310 acaatttcatcgatgttgat 329  Q
     |||||| || |||||||||    
T  44166635 gcaattt-atggatgttgat 44166617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 3505161 - 3505231
Alignment:
Q  261 aaatattgtgatacgatgtttt--aaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    ||||||||||||| ||| ||||  ||||| | |||| |||||||||| |||||||||| ||||||||||||    
T  3505161 aaatattgtgatatgatattttttaaatggagttttaaagagaattttgttacaattttatcgatgttgat 3505231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 43416299 - 43416364
Alignment:
Q  231 ttttggtccctctatcaaatattttgtctaaaatattgtg--atacgatgttttaaatgaaatttt 294  Q
    |||||||||||||||  |||| |||||||||||||| |||  |||  |||||||||||||||||||    
T  43416299 ttttggtccctctatttaataatttgtctaaaatatggtgatataacatgttttaaatgaaatttt 43416364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 329
Target Start/End: Complemental strand, 35021277 - 35021131
Alignment:
Q  184 tttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttt 281  Q
    |||| |||||| ||||||||||| || |||||| |||| ||  ||||||||||||| |||||||||| |||||||||||||||||||||| |  ||||||    
T  35021277 ttttcatcattttgcaaaattggtcctcctattataaa-ttagacaattttggtccttctatcaaattttttgtctaaaatattgtgatatgatatgttt 35021179  T
Q  282 taaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    |||||||| ||||||||| ||||| ||  |||||| ||||||||||||    
T  35021178 taaatgaagttttcaagaaaattttgtcgcaattttatcgatgttgat 35021131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 35695324 - 35695478
Alignment:
Q  180 cctatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtg--atacgat 277  Q
    |||||||| | |||| || |||||||| || | ||||||||||||  |||| |||||||||| |||| |||||||| |||||||||| |||  |||  ||    
T  35695324 cctattttcaccattttgtaaaattggtccccttattttaaaattcgacaactttggtccctttatctaatattttatctaaaatatggtgatataacat 35695423  T
Q  278 gttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    |||| ||||||| | ||||||  |||||  |||| ||||||||||||||||||||    
T  35695424 gtttcaaatgaagtattcaaggaaattttcttacgatttcatcgatgttgatatt 35695478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 326
Target Start/End: Original strand, 40609684 - 40609824
Alignment:
Q  181 ctatttttatcattatgcaaaattgggcca-cctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacgatgt 279  Q
    |||||||||||||| ||| ||||||  ||  ||||||||||||||  |||||||| |||    |||||||||||||||||      |||||||| |||||    
T  40609684 ctatttttatcattttgcgaaattgatccctcctattttaaaattcgacaattttagtcttggtatcaaatattttgtct------ttgtgatatgatgt 40609777  T
Q  280 tttaaatgaaattttcaagagaatttggttacaatttcatcgatgtt 326  Q
    ||||||| |||||||||  ||||||| |||||||||||||| |||||    
T  40609778 tttaaataaaattttcataagaattttgttacaatttcatcaatgtt 40609824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 1602694 - 1602752
Alignment:
Q  215 ttttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgata 273  Q
    ||||||||||| ||| |||||||||||| ||||||||||| ||||||||||| ||||||    
T  1602694 ttttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtgata 1602752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 42006631 - 42006538
Alignment:
Q  214 attttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgttttaaatgaaattttcaagagaattt 305  Q
    |||||||||||| ||| ||||||||| | |||  ||||||||||| |||||||  ||||| |  ||||||||||| || ||||||| |||||||    
T  42006631 attttaaaatttcacagttttggtccttttatataatattttgtcgaaaatatgatgatatgacatgttttaaattaagttttcaaaagaattt 42006538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 30257329 - 30257382
Alignment:
Q  213 tattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatat 266  Q
    ||||||||||||||| | |||| |||| | ||||||||||||| ||||||||||    
T  30257329 tattttaaaatttaatagttttcgtccttgtatcaaatattttatctaaaatat 30257382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 43227815 - 43227759
Alignment:
Q  276 atgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgatatt 332  Q
    |||||||||||||| |||||||||||||||  | ||||||| ||||| ||| |||||    
T  43227815 atgttttaaatgaagttttcaagagaattttctaacaattttatcgaggtttatatt 43227759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 329
Target Start/End: Complemental strand, 17836 - 17687
Alignment:
Q  182 tatttttatcattatgcaaaattgggccacctattttaaaatttaacaattttggtccctctatcaaatattttgtctaaaatattgtgatacg--atgt 279  Q
    |||||| |||||| || |||||||| |   || ||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||| |  ||||    
T  17836 tattttcatcattttgtaaaattggtctctctgttttaaaattccacaattttggtcattctatcaaatattttgtctaaaatattgtgatatgatatgt 17737  T
Q  280 tttaaatgaaattttcaagagaatttggttacaatttcatcgatgttgat 329  Q
    |||||||||| ||||||||| | |||  |||| |||||||||||||||||    
T  17736 tttaaatgaagttttcaagatagttttattaccatttcatcgatgttgat 17687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 20291 - 20388
Alignment:
Q  229 aattttggtccctctatcaaatattttgtctaaaatattgtgatacgatgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttga 328  Q
    ||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||   ||||| |||||||||||||| |||||||    
T  20291 aattttggtccttctatcaaatattttgtctaaaatattgtgat---atgttttaaatgaaattttcaatgaaattttgttacaatttcatcaatgttga 20387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 229 - 329
Target Start/End: Original strand, 30459 - 30556
Alignment:
Q  229 aattttggtccctctatcaaatattttgtctaaaatattgtgatacgatgttttaaatgaaattttcaagagaatttggttacaatttcatcgatgttga 328  Q
    ||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||   ||||| |||||||||||||| |||||||    
T  30459 aattttggtccttctatcaaatattttgtctaaaatattgtgat---atgttttaaatgaaattttcaatgaaattttgttacaatttcatcaatgttga 30555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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