View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1158_high_40 (Length: 337)
Name: NF1158_high_40
Description: NF1158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1158_high_40 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 47299184 - 47298871
Alignment:
| Q |
8 |
caatgcacgctcgaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47299184 |
caatgcacgctcgaggtttaatgttaacaattcgccacttgttggatactacggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctt |
47299085 |
T |
|
| Q |
108 |
tgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttatta |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47299084 |
tgtggaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttacagaggaatacatgcattctgtggccgatcttatggttatta |
47298985 |
T |
|
| Q |
208 |
aggaacggtgtttatttacaactgtaaggtcttgtattatttcagatttgactcgtgctaggttcttcgaagtgaatttcggatggggtgaaggggtgta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
47298984 |
aggaacggtgtttatttacaactgtaaggtcttgtattatttcagatttgactcgtgctaggctctcagaagtgaatttcggatggggtgaaggggtgta |
47298885 |
T |
|
| Q |
308 |
tggtggagttgcaa |
321 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
47298884 |
tggtggagttgcaa |
47298871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 47292584 - 47292264
Alignment:
| Q |
1 |
gcgtcgtcaatgcacgctcgaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
47292584 |
gcgtcgtcaatgcacgctcgaggtttaacattaacaattcgccacttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagg |
47292485 |
T |
|
| Q |
101 |
gaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatg |
200 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47292484 |
gaagctttgtggaaatccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatg |
47292385 |
T |
|
| Q |
201 |
gttattaaggaacggtgtttatttacaactgtaaggtcttgtattatttcagatttgactcgtgctaggttcttcgaagtgaatttcggatggggtgaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||||||||||| || |||||||||| |
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|
| T |
47292384 |
gttattaaggaacggtgtttatttacaactgtaaggtcttgtgttatctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaag |
47292285 |
T |
|
| Q |
301 |
gggtgtatggtggagttgcaa |
321 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47292284 |
gggtgtatggtggagttgcaa |
47292264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 47267669 - 47267984
Alignment:
| Q |
6 |
gtcaatgcacgctcgaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaagc |
105 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
47267669 |
gtcaatgcacgttcgaggtttaatgctaacaattcgccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagc |
47267768 |
T |
|
| Q |
106 |
tttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttat |
205 |
Q |
| |
|
|||||| |||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||| |
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|
| T |
47267769 |
tttgtggaaactcattaggttatgctgtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttat |
47267868 |
T |
|
| Q |
206 |
taaggaacggtgtttatttacaactgtaaggtcttgtattatttcagatttgactcgtgctaggttcttcgaagtgaatttcggatggggtgaaggggtg |
305 |
Q |
| |
|
||| || |||||||||||||||||| ||||||||||| || |||||||| | |||||| | ||| |||||| |||| ||||||||||| | ||| |
|
|
| T |
47267869 |
taaagagcggtgtttatttacaactataaggtcttgtgttgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtg |
47267968 |
T |
|
| Q |
306 |
tatggtggagttgcaa |
321 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
47267969 |
tatggtggagctgcaa |
47267984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 4 - 316
Target Start/End: Original strand, 47283632 - 47283944
Alignment:
| Q |
4 |
tcgtcaatgcacgctcgaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaa |
103 |
Q |
| |
|
|||| |||||||| || ||||||| | | || ||||||||||||||||||| ||||||||||||||||||| ||| || || |||||||| ||| |||| |
|
|
| T |
47283632 |
tcgttaatgcacgttcaaggtttagggctgaccattcgccacttgttggatattatggtaactgttttgctttcccggctgctgtcaccaccgcagggaa |
47283731 |
T |
|
| Q |
104 |
gctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggtt |
203 |
Q |
| |
|
|||||||| |||||| || |||||||||||||| ||| |||||||| ||||||| ||||||| || ||||||||||||||| |||| |||||||||||| |
|
|
| T |
47283732 |
gctttgtggaaaccctttaggttatgcagtggaattgataagaaaagcaaaagctcaagttacagaagaatacatgcattctttggcagatcttatggtt |
47283831 |
T |
|
| Q |
204 |
attaaggaacggtgtttatttacaactgtaaggtcttgtattatttcagatttgactcgtgctaggttcttcgaagtgaatttcggatggggtgaagggg |
303 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| || ||| || | ||||| ||||||||||||| || | ||||||||||||||||||||||| | || |
|
|
| T |
47283832 |
attaaggaacgatgtttatttacaacagtaagatcgtgtgttgtatcagacttgactcgtgctaagtacgcagaagtgaatttcggatggggtgaggcgg |
47283931 |
T |
|
| Q |
304 |
tgtatggtggagt |
316 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47283932 |
tgtatggtggagt |
47283944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 313
Target Start/End: Original strand, 47279039 - 47279348
Alignment:
| Q |
4 |
tcgtcaatgcacgctcgaggtttaatgttaacaattcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaa |
103 |
Q |
| |
|
|||| |||||||| || ||||||| | | || ||||||||||||||||||| ||||||||||||||||||| ||| || || |||||||| ||| |||| |
|
|
| T |
47279039 |
tcgttaatgcacgttcaaggtttagggctgaccattcgccacttgttggatattatggtaactgttttgctttcccggctgctgtcaccaccgcagggaa |
47279138 |
T |
|
| Q |
104 |
gctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggtt |
203 |
Q |
| |
|
|||||||| ||| || || ||||||| |||||| ||| |||||||| ||||||| ||||||| || ||||||||||||||| |||| |||||||||||| |
|
|
| T |
47279139 |
gctttgtggaaatcctttaggttatggagtggaattgataagaaaagcaaaagctcaagttacagaagaatacatgcattctttggcagatcttatggtt |
47279238 |
T |
|
| Q |
204 |
attaaggaacggtgtttatttacaactgtaaggtcttgtattatttcagatttgactcgtgctaggttcttcgaagtgaatttcggatggggtgaagggg |
303 |
Q |
| |
|
||||||||||| |||||||||||||| |||| |||||| || | ||||| ||||||||||||| || | ||||||||||| ||||||||||| | || |
|
|
| T |
47279239 |
attaaggaacgatgtttatttacaacaataagatcttgtgttgtatcagacttgactcgtgctaagtacgcagaagtgaattttggatggggtgaggcgg |
47279338 |
T |
|
| Q |
304 |
tgtatggtgg |
313 |
Q |
| |
|
|||||||||| |
|
|
| T |
47279339 |
tgtatggtgg |
47279348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 47256887 - 47257201
Alignment:
| Q |
4 |
tcgtcaatgcacgctcgaggtttaatgttaacaa---ttcgccacttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaag |
100 |
Q |
| |
|
|||| ||||||||||||||||||| || ||| || |||| | || ||||||| ||||| |||||| |||||| | | ||||| |||||||| |||| |
|
|
| T |
47256887 |
tcgttaatgcacgctcgaggtttagtgctaataaccgttcgtcgctcattggatattatggcaactgtattgctttctcggcggcagtcaccaccgcaaa |
47256986 |
T |
|
| Q |
101 |
gaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatg |
200 |
Q |
| |
|
| ||||||||| ||||| ||| |||||||||||||||||| |||||||| ||||||| ||||||| ||| | |||||||| || |||| ||| ||||| |
|
|
| T |
47256987 |
ggagctttgtggaaaccaattaggttatgcagtggagttgataagaaaagcaaaagctcaagttacagagaagtacatgcactcattggcagattttatg |
47257086 |
T |
|
| Q |
201 |
gttattaaggaacggtgtttatttacaactgtaaggtcttgtattatttcagatttgactcgtgctaggttcttcgaagtgaatttcggatggggtgaag |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||| | ||| | ||||| | ||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
47257087 |
gttattaaggaacgatgtttatttacaaagggaagaacatgtatggtgtcagattggactcgtgctaagttctcagaagtgaatttcggatggggtgaag |
47257186 |
T |
|
| Q |
301 |
gggtgtatggtggag |
315 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47257187 |
ctgtgtatggtggag |
47257201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 46 - 299
Target Start/End: Original strand, 47242805 - 47243058
Alignment:
| Q |
46 |
ttgttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtgaaaacccatttggttatgcagtggagttggtaag |
145 |
Q |
| |
|
|||||||||| || ||||| || |||||| | | ||||| |||||||| |||| | ||||||||| ||||| ||| |||||||||||||||||| |||| |
|
|
| T |
47242805 |
ttgttggatattacggtaattgcattgctttctcggcggctgtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagttgataag |
47242904 |
T |
|
| Q |
146 |
aaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaaggtcttgtatt |
245 |
Q |
| |
|
|||| |||| || ||||||| |||||||||||||||||| | || ||| ||||||||||||||||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
47242905 |
aaaagcaaaaactcaagttacagaggaatacatgcattctttagcagattttatggttattaaggaacgatgtttatttacaactggaagaacttgtata |
47243004 |
T |
|
| Q |
246 |
atttcagatttgactcgtgctaggttcttcgaagtgaatttcggatggggtgaa |
299 |
Q |
| |
|
| || |||| ||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
47243005 |
gtgtcggattggactcgtgctaatttctcagaagtgaatttcggatggggtgaa |
47243058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 49 - 316
Target Start/End: Original strand, 32731475 - 32731742
Alignment:
| Q |
49 |
ttggatactatggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtgaaaacccatttggttatgcagtggagttggtaagaaa |
148 |
Q |
| |
|
||||||| || ||||| ||| |||||| | | ||||| |||||||| |||| | ||||||||| ||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
32731475 |
ttggatattacggtaattgtattgctttctcggcggctgtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagttgataagaaa |
32731574 |
T |
|
| Q |
149 |
attaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaaggtcttgtattatt |
248 |
Q |
| |
|
| |||| || ||||||| |||||||||||||||||| | || ||| |||||||||||||||||| |||||||||||||| | ||| ||||||| | |
|
|
| T |
32731575 |
agcaaaaactcaagttacagaggaatacatgcattctttagcagattgtatggttattaaggaacgatgtttatttacaaccggaagaacttgtatggtg |
32731674 |
T |
|
| Q |
249 |
tcagatttgactcgtgctaggttcttcgaagtgaatttcggatggggtgaaggggtgtatggtggagt |
316 |
Q |
| |
|
||||||| ||||||||||| || | |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32731675 |
tcagattggactcgtgctaatttatcagaagtgaatttcggatggggtgaaacaatgtatggtggagt |
32731742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 332
Target Start/End: Original strand, 20519638 - 20519767
Alignment:
| Q |
203 |
tattaaggaacggtgtttatttacaactgtaaggtcttgtattatttcagatttgactcgtgctaggttcttcgaagtgaatttcggatggggtgaaggg |
302 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| | |||| |||| ||||||||||| ||||||| |||| ||||||||||| ||||||||||| | | |
|
|
| T |
20519638 |
tattaaggaacgatgtttacttacaactgtaagttgttgtgttatgtcagatttgacacgtgctaagttcagagaagtgaattttggatggggtgaggcg |
20519737 |
T |
|
| Q |
303 |
gtgtatggtggagttgcaacagctagggct |
332 |
Q |
| |
|
||||||||||||||||| |||| ||||| |
|
|
| T |
20519738 |
aagtatggtggagttgcaaaagctggggct |
20519767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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